Publikationen

Wissenschaftliche Publikationen, die im Rahmen der Medizininformatik-Initiative entstehen, werden hier aufgeführt:
Erscheinungsjahr
20242023202220212020201920182017

2024:

  • Albashiti, F., Thasler, R., Wendt, T. et al. Die Datenintegrationszentren – Von der Konzeption in der Medizininformatik-Initiative zur lokalen Umsetzung in einem Netzwerk Universitätsmedizin. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03879-5 
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  • Ammon, D., Kurscheidt, M., Buckow, K. et al. Arbeitsgruppe Interoperabilität: Kerndatensatz und Informationssysteme für Integration und Austausch von Daten in der Medizininformatik-Initiative. Bundesgesundheitsbl  (2024). doi: 10.1007/s00103-024-03888-4 
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  • Ammon D. Gesundheitsdaten in Forschung und Wissenschaft. In: Health Data Management. Schlüsselfaktor für erfolgreiche Krankenhäuser (2024). doi: 10.1007/978-3-658-43236-2_16
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  • Bathelt F, Marx G, Sedlmayr M. 2022. 91:49-52. Digitale FortschrittsHubs Gesundheit. Der Weg der Medizininformatik-Initiative von Universitätskliniken zu nicht-universitären Leistungserbringern. KU 4-2022.
  • Bayas, A., Mansmann, U., Ön, B. I., Hoffmann, V. S., Berthele, A., Mühlau, M., Kowarik, M. C., Krumbholz, M., Senel, M., Steuerwald, V., Naumann, M., Hartberger, J., Kerschensteiner, M., Oswald, E., Ruschil, C., Ziemann, U., Tumani, H., Vardakas, I., Albashiti, F., Kramer, F., … ProVal-MS study group (2024). Prospective study validating a multidimensional treatment decision score predicting the 24-month outcome in untreated patients with clinically isolated syndrome and early relapsing-remitting multiple sclerosis, the ProVal-MS study. Neurological research and practice, 6(1), 15.. doi: 10.1186/s42466-024-00310-x.
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  • Beliën, J., Beusink, M., Boeker, M., Boiten, J.-W., Bolding, N., Buckow, K., Crameri, K., Drepper, J., Kleinert, P., Ganslandt, T., Geiger, T. R., Prokosch, H.-U., Sax, U., Scherag, A., Schug, S. H., Semler, S. C., Steiner, M., Wissing, F., & Zenker, S. (2024). Transnational health care research – carefully connecting the dots towards a European Health Data Space. Zenodo. doi: 10.5281/zenodo.12607200
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  • Blasini, Romina et al. “Evaluation of Eligibility Criteria Relevance for the Purpose of IT-Supported Trial Recruitment: Descriptive Quantitative Analysis.” JMIR formative research vol. 8 e49347. 31 Jan. 2024. doi:10.2196/49347 
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  • Boehm D, Strantz C, Christoph J, Busch H, Ganslandt T, Unberath P. Data Visualization Support for Tumor Boards and Clinical Oncology: Protocol for a Scoping Review. JMIR Res Protoc (2024); 13; e53627. doi: 10.2196/53627
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  • Boeker, M., Zöller, D., Blasini, R. et al. Effectiveness of IT-supported patient recruitment: study protocol for an interrupted time series study at ten German university hospitals. Trials 25, 125 (2024). doi: 10.1186/s13063-024-07918-z 
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  • Borchert F, Llorca I, Schapranow MP. 2024. vol. 2024. Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database. DOI: 10.1093/database/baae067
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  • Cheng KY, Pazmino S, Bergh B, Lange-Hegermann M, Schreiweis B. An Image Retrieval Pipeline in a Medical Data Integration Center. Stud Health Technol Inform. 2024 Jan 25;310:1388-1389. doi: 10.3233/SHTI231208. PMID: 38269660.
  • Cheng KY, Pazmino S, Qian H, Bergh B, Schreiweis B. Structured Data Retrieval and Analysis of HL7 v2 Messages with Elasticsearch. Stud Health Technol Inform. 2024 Jan 25;310:1464-1465. doi: 10.3233/SHTI231246. PMID: 38269698. 
  • Gulden, Christian & Macho, Philipp & Reinecke, Ines & Strantz, Cosima & Prokosch, Hans-Ulrich & Blasini, Romina. (2024). recruIT: A cloud-native clinical trial recruitment support system based on Health Level 7 Fast Healthcare Interoperability Resources (HL7 FHIR) and the Observational Medical Outcomes Partnership Common Data Model (OMOP CDM). Computers in Biology and Medicine. 174. doi: 108411. 10.1016/j.compbiomed.2024.108411. 
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  • Hahn, Udo et al. “Final Report on the German Clinical Reference Corpus 3000PA.” Studies in health technology and informatics vol. 310 (2024): 599-603. doi:10.3233/SHTI231035
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  • Kirsten, T., Kleinert, P., Gebhardt, M. et al. Grundlagen für die wissenschaftliche Nutzung umfangreicher Versorgungsdaten in Deutschland – Ergebnisse der AG Data Sharing der Medizininformatik-Initiative. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03880-y 
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  • Knaup-Gregori, P., Boeker, M., Kirsten, T. et al. Kompetenzentwicklung in der Medizininformatik-Initiative (MII) – Lehrangebote für einen souveränen und sicheren Umgang mit medizinischen Daten. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03881-x
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  • Krefting, D., Bavendiek, U., Fischer, J. et al. Die digitalen Fortschrittshubs Gesundheit – Gemeinsame Datennutzung über die Universitätsmedizin hinaus. Bundesgesundheitsbl (2024). doi:10.1007/s00103-024-03883-9
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  • Loeffler, M., Maas, R., Neumann, D. et al. INTERPOLAR – prospektive, interventionelle Studien im Rahmen der Medizininformatik-Initiative zur Verbesserung der Arzneimitteltherapiesicherheit in der Krankenversorgung. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03890-w 
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  • Marschollek, M., Marquet, M., Reinoso Schiller, N. et al. Automatisierte Surveillance und Risikovorhersage mit dem Ziel einer risikostratifizierten Infektionskontrolle und -prävention (RISK Prediction for Risk-stratified Infection Control and Prevention). Bundesgesundheitsbl (2024). doi:10.1007/s00103-024-03882-w
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  • Metzger, P., Boerries, M. Das Verbundprojekt „Personalisierte Medizin für die Onkologie“ (PM4Onco) als Teil der Medizininformatik-Initiative (MII). Bundesgesundheitsbl  (2024). doi:10.1007/s00103-024-03886-6
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  • Metzger P, Gräßel L, Illert L, Boerries M Sondersituation der Daten in der Onkologie. Die Onkologie | Ausgabe 5/2024. doi: 10.1007/s00761-023-01468-w
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  • Modersohn, Luise, and Udo Hahn. “Influence of Context in Transformer-Based Medication Relation Extraction.” Studies in health technology and informatics vol. 310 (2024): 669-673. doi:10.3233/SHTI231049 
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  • Molinnus D, Kurth A, Lowitsch V, Marx G, Bickenbach J. 2023 302366-367. Towards an Advanced Digital Infrastructure Within the Non-University Sector Demonstrated by the PICOS App. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230143
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  • Sadeghi S, Hempel L, Rodemund N, Kirsten T. 202414(1)11438. Salzburg Intensive Care database (SICdb): a detailed exploration and comparative analysis with MIMIC-IV. Scientific Reports. doi: 10.1038/s41598-024-61380-0 
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  • Schreiweis B, Ulrich H, Lehmann H, Kock-Schoppenhauer A, Kinast B, Bergh B, Die Wissensmanagementplattform für Versorgung und Forschung am Universitätsklinikum Schleswig-Holstein – Ein Praxisbeispiel, Health Data Management: Schlüsselfaktor für erfolgreiche Krankenhäuser, V. Henke, G. Hülsken, H. Schneider, and J. Varghese, Eds., Wiesbaden: Springer Fachmedien Wiesbaden, 2024, pp. 689-701. doi: 10.1007/978-3-658-43236-2_58
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  • Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T, Datenintegrationszentren (DIZ) für eine bessere Vernetzung von Krankenversorgung und Forschung, Health Data Management: Schlüsselfaktor für erfolgreiche Krankenhäuser, V. Henke, G. Hülsken, H. Schneider, and J. Varghese, Eds., Wiesbaden: Springer Fachmedien Wiesbaden, 2024, pp. 497-506. doi: 10.1007/978-3-658-43236-2_42
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  • Sedlmayr, M., Semler, S.C. Die Medizininformatik-Initiative als Wegbereiter für die datengetriebene Gesundheitsforschung in Deutschland. Bundesgesundheitsbl  (2024). doi: 10.1007/s00103-024-03885-7
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  • Semler, S.C., Boeker, M., Eils, R. et al. Die Medizininformatik-Initiative im Überblick – Aufbau einer Gesundheitsforschungsdateninfrastruktur in Deutschland. Bundesgesundheitsbl  (2024). doi: 10.1007/s00103-024-03887-5 
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  • Ulrich H, Anywar M, Kinast B, Schreiweis B. Large-Scale Standardized Image Integration for Secondary Use Research Projects. Stud Health Technol Inform. 2024 Jan 25;310:174-178. doi: 10.3233/SHTI230950. PMID: 38269788. 
  • Waltemath, D., Beyan, O., Crameri, K. et al. FAIRe Gesundheitsdaten im nationalen und internationalen Datenraum. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03884-8
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  • Welten, S., de Arruda Botelho Herr, M., Hempel, L., Hieber, D., Placzek, P., Graf, M., Weber, S., Neumann, L., Jugl, M., Tirpitz, L., Kindermann, K., Geisler, S., Bonino da Silva Santos, L. O., Decker, S., Pfeifer, N., Kohlbacher, O., & Kirsten, T. (2024). A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis. Scientific data, 11(1), 663. doi: 10.1038/s41597-024-03450-6
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  • Zenker S, Strech D, Jahns R, Müller G, Prasser F, Schickhardt C, Schmidt G, Semler SC, Winkler E, Drepper J. National standardisierter Broad Consent in der Praxis: erste Erfahrungen, aktuelle Entwicklungen und kritische Betrachtungen [Nationally standardized broad consent in practice: initial experiences, current developments, and critical assessment]. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2024 Apr 19. German. doi: 10.1007/s00103-024-03878-6. Epub ahead of print. PMID: 38639817.
  • Zöller, D., Haverkamp, C., Makoudjou, A. et al. Alpha-1-antitrypsin-deficiency is associated with lower cardiovascular risk: an approach based on federated learning. Respir Res 25, 38 (2024). doi: 10.1186/s12931-023-02607-y 
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2023:

  • Barakat C, Aach M, Schuppert A, Brynjólfsson S, Fritsch S, Riedel M., Analysis of Chest X-ray for COVID-19 Diagnosis as a Use Case for an HPC-Enabled Data Analysis and Machine Learning Platform for Medical Diagnosis Support., diagnostics. 2023; 13(3):391. DOI: 10.3390/diagnostics13030391.
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  • Barakat CS, Sharafutdinov K, Busch J, Saffaran S, Bates DG, Hardman JG, Schuppert A, Brynjólfsson S, Fritsch S, Riedel M. Developing an Artificial Intelligence-Based Representation of a Virtual Patient Model for Real-Time Diagnosis of Acute Respiratory Distress Syndrome. Diagnostics (Basel). 2023 Jun 17;13(12):2098. doi: 10.3390/diagnostics13122098. PMID: 37370993.
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  • Beger C, Boehmer AM, Mussawy B, Redeker L, Matthias F, Schäfermeier R, Härdtlein A, Dreischulte T, Neumann D, Uciteli A. 2023 307. Modelling Adverse Events with the TOP Phenotyping Framework. German Medical Data Sciences 2023. DOI: 10.3233/SHTI230695
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  • Beger C, Matthies F, Schäfermeister R, Uciteli A. 2023. Model-driven execution of phenotype algorithms – introduction of the Terminology- and Ontology-based Phenotyping Framework. GMS Medizinische Informatik, Biometrie und Epidemiologie. DOI: 10.3205/mibe000256
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  • Bickenbach J, Schuppert A, Scherag A, Kao J, Bleilevens A, Lowitsch V, Marx G. 2023. ASIC Daten und App Usage. SMITH Science Day 2022. DOI: 10.3205/22smith13
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  • Bott OJ, Berger U, Egbert N, Herrmann C, Schneider B, Sellemann B, Spreckelsen C, Strahwald B, Varghese J, Winter A. 2023 302438-42. On the Effecitve Dissemination and Use of Learning Objectives Catalogs for Health Information Curricula Development. Studies in Health Technology and Informatics. DOI: 10.3233/shti230168
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  • Borchert F, Llorca I, Schapranow MP. 2023. vol. 14163. Cross-Lingual Candidate Retrieval and Reranking for Biomedical Entity Linking. Experimental IR Meets Multilinguality, Multimodality, and Interaction. CLEF 2023. Lecture Notes in Computer Science. DOI: 10.1007/978-3-031-42448-9_12
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  • Borchert F, Llorca I, Schapranow MP. 2023. HPI-DHC @ BC8 SympTEMIST Track: Detection and Normalization of Symptom Mentions with SpanMarker and xMEN. Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the Era of Generative Models.
  • Draeger C, Löbe M, Meineke FA. 2023 . Data Quality Assessment in the seventh MII-Projectathon. GMDS 2023.
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  • Draeger C, Stäubert S, Kuntz A, Henke C, Winter A, Sax U, Löbe M. 2023 309. Modeling the Application of IHE QRPH Profiles in Data Integratoin Centers: A Practical Approach with 3LGM2. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230755
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  • Erdfelder F, Begerau H, Meyers D, Quast KJ, Schumacher D, Brieden T, Ihle R, Ammon D, Kruse HM, Zenker S, Enhancing Data Protection via Auditable Informational Separation of Powers Between Workflow Engine Based Agents: Conceptualization, Implementation, and First Cross-Institutional Experiences., Studies in Health Technology and Informatics. 2023; 302:317-321. DOI: 10.3233/SHTI230126.
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  • Faessler E, Hahn U, Schäuble S. 2023. 51. GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions. Nucleic Acids Research.
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  • Festag S, Spreckelsen C, Medical multivariate time series imputation and forecasting based on a recurrent conditional Wasserstein GAN and attention. Journal of Biomedical Informatics. 2023; 139:104320. DOI: 10.1016/j.jbi.2023.104320.
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  • Fonck S, Fritsch S, Nottenkämper G, Stollenwerk A. 2023. 2 (1):742. Implementation of ResNet-50 for the Detection of ARDS in Ches X-Rays using transfer-learning. Proceedings on automation in medical engineering. DOI: 10.18416/automed.2023
  • Fonck S, Fritsch S, Stollenwerk A. 2023 . Software-Architektur für eine KI-Unterstützung bei der ARDS Behandlung. SMITH Science Day 2022. DOI: 10.3205/22smith17
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  • Fox S, Preiß M, Borchert F, Rasheed A, Schapranow MP. 2023. pp. 185-192. HPIDHC at NTCIR-17 MedNLP-SC: Data Augmentation and Ensemble Learning for Multilingual Adverse Drug Event Detection. NTCIR 17 Conference: Proceedings of the 17th NTCIR Conference on Evaluation of Information Access Technologies. DOI: 10.20736/0002001295
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  • Heming, Michael et al. “Supporting the differential diagnosis of connective tissue diseases with neurological involvement by blood and cerebrospinal fluid flow cytometry.” Journal of neuroinflammation vol. 20,1 46. 23 Feb. 2023, doi:10.1186/s12974-023-02733-w
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  • Henke E, Zoch M, Reinecke I, Spoden M, Ruhnke T, Günster C, Sedlmayr M, Bathelt F (2023): "German Claims Data for Real-World Research: Content Coverage Evaluation in OMOP CDM". Stud Health Technol Inform. 2023 May 18;302:3-7. doi: 10.3233/SHTI230053. PMID: 37203598.
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  • Henke V, Hülsken G, Schneider H, Varghese J. 2023. Health Data Management im Krankenhaus - Compliance-konformer Umgang mit Gesundheitsdaten als erfolgreicher Schlüsselfaktor. Springer Gabler.
  • Intemann T, Kaulke K, Kipker D-K, Lettieri V, Stallmann C, Schmidt CO, Geidel L, Bialke M, Hampf C, Stahl D, Lablans M, Franke M, Kraywinkel KP, Kieschke J, Bartholomäus S, Näher A-F, Tremper G, Lambarki M, March S, Prasser F, Haber AC, Drepper J, Schlünder I, Kirsten T, Pigeot I, Sax U, Buchner B, Ahrens W, Semler SC: White Paper - Verbesserung des Record Linkage für die Gesundheitsforschung in Deutschland (DOI: 10.4126/FRL01-006461895)
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  • Kolditz T, Lohr C, Moderohn L, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 2: Annotation von personenidentifizierenden (PHI-)Attributen. Zenodo. 2023. DOI: 10.5281/zenodo.7707882.
  • Kreuzthaler M, Brochhausen M, Zayas C, Blobel B, Schulz S. 2023 101073313. Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems. Frontiers in Medicine. DOI: 10.3389/fmed.2023.1073313
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  • Kämmer N, Borchert F, Winkler S, de Melo G, Schapranow MP. 2023. pp. 292-305. Resolving Elliptical Compounds in German Medical Text. The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks. DOI: 10.18653/v1/2023.bionlp-1.26
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  • Llorca I, Borchert F, Schapranow MP. 2023. pp. 171-181. A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. Proceedings of the 5th Clinical Natural Language Processing Workshop. DOI: 10.18653/v1/2023.clinicalnlp-1.23
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  • Lohr C, Hahn U. 2023. pp. 218-228. DoPA Meter - A Tool Suite for Metrical Document Profiling and Aggregation. EMNLP Demo 2023 - Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing: System Demonstrations.
  • Lohr C, Kolditz T, Modersohn L, Hellrich J, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 3: Annotation von Basis-Entitäten: Diagnosen, Befunde und Symptome. Zenodo. 2023. DOI: 10.5281/zenodo.7707916.
  • Lohr C, Luther S, Ammon D, Saleh K, Modersohn L, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 1: Annotation von inhaltlich kohärenten Textabschnitten (Sektionen). Zenodo. 2023. DOI: 10.5281/zenodo.7707756.
  • Lowitsch V, Remmler A, Richter F, Sezer M. 2023. ASIC-App (Algorithmic Surveillance of ICU Patients). SMITH Science Day 2022. DOI: 10.3205/22smith14
  • Mang JM, Prokosch HU, Kapsner L. "Reproducibility in 2023 – An End-to-End Template for Analysis and Manuscript Writing" Stud Health Technol Inform 2023; 18;302:58-62. DOI: 10.3233/SHTI230064.
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  • Marx G, Schuppert A, Scherag A, Kao J, Bleilevens A, Lowitsch V, Bickenbach J. 2023. Use Case ASIC - Daten und detaillierte Analyse. SMITH Science Day 2022. DOI: 10.3205/22smith02
  • Matthies F, Beger C, Schäfermeier R, Uciteli A. 2023 307. Concept Graphs: A Novel Approach for Textual Analysis of Medical Documents. German Medical Data Sciences 2023. DOI: 10.3233/SHTI230710
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  • Matthies F, Lohr C, Modersohn L, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 4: Annotation von Medikationsangaben. Zenodo. 2023. DOI: 10.5281/zenodo.7707946.
  • Matthies F, Neumann D. 2023. Struktursuche in pharmazeutischen Fachinformationen zur maschinenlesbaren Abbildung von AMTS-relevanten Informationen. SMITH Science Day 2022. DOI: 10.3205/22smith26
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  • Meineke FA, Modersohn L, Löffler M, Böker M. 2023 302835-836. Announcement of the German Medical Text Corpus Project. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230283
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  • Metzger P, Hess ME, Blaumeiser A, Pauli T, Schipperges V, Mertes R, Christoph J, Unberath P, Reimer N, Scheible R, Illert AL, Busch H, Andrieux G, Boerries M. "MIRACUM-Pipe: An Adaptable Pipeline for Next-Generation Sequencing Analysis, Reporting, and Visualization for Clinical Decision Making." Cancers 2023; 15:3456. DOI: 10.3390/cancers15133456.
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  • Molinnus D, Kurth A, Lowitsch V, Marx G, Bickenbach J. 2023 302366-367. Towards an Advanced Digital Infrastructure Within the Non-University Sector Demonstrated by the PICOS App. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230143
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  • Nelde A, Schuster H, Heitmann JS, Bauer J, Maringer Y, Zwick M, Volkmer J-P, Chen JY, Paczulla Stanger AM, Lehmann A, Appiah B, Märklin M, Rücker-Braun E, Salih HR, Roerden M, Schroeder SM, Häring M-F, Schlosser A, Schetelig J, Schmitz M, Boerries M, Köhler N, Lengerke C, Majeti R, Weissman IL, Rammensee H-G and Walz JS
    Immune Surveillance of Acute Myeloid Leukemia Is Mediated by HLA-Presented Antigens on Leukemia Progenitor Cells. Blood Cancer Discov (2023) 4 (6) 468–489. doi: 10.1158/2643-3230.BCD-23-0020
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  • Neumann D, Böhmer A. 2023. Patient Journey Modeling zur menschen- und maschinenlesbaren Operationalisierung unerwünschter arzneimittelbezogener Ereignisse am Beispiel des unerwünschten Ereignisses gastrointestinale Blutung. SMITH Science Day 2022. DOI: 10.3205/22smith25
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  • Neumann D, Thalheim T, Kesselmeier M, Andrikyan W, Farker K, Weisbah L, Schuster AK, Karsten Dafonte K, Böhmer A, Then MI, Maas R, Fromm MF, Scherag A, Löffler M. 2023. POLAR Plausibilisierungskampagne – technischer Test. SMITH Science Day 2022. DOI: 10.3205/22smith31
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  • Palm J, Meineke F, Przybilla J, Peschel T. 2023 1454-64. fhircrackr: An R package unlocking Fast Healthcare Interoperability Resources (FHIR) for statistical analysis. Applied Clinical Informatics. DOI: 10.1055/s-0042-1760436
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  • Peng Y, Henke E, Reinecke I, Zoch M, Sedlmayr M, Bathelt F. "An ETL-process design for data harmonization to participate in international research with German real-world data based on FHIR and OMOP CDM." Int J Med Inform 2023; 169:104925. DOI: 10.1016/j.ijmedinf.2022.104925.
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  • Prokosch H.U., Gebhardt M., Gruendner J., Kleinert P., Buckow K., Rosenau R., Semler S.C (2023).  Towards a National Portal for Medical Research Data (FDPG): Vision, Status, and Lessons Learned. Stud Health Technol Inform. 2023; 18;302:307-311. doi: 10.3233/SHTI230124.  PMID: 37203668.
  • Prokosch H.U., Gruendner J., Gebhardt M., Buckow K., Kleinert P., Semler S.C. (2023). Das Forschungsdatenportal für Gesundheit: Zugang zu Real World Routinedaten der deutschen Universitätskliniken. gesundhyte.de Dec 2023. 15: 15-19.
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  • Polzin R, Sharafutdinov K, Mayer H, Barakat C, Marx G, Bickenbach J, Schuppert A. 2023. DEA Diagnostic Expert Advisor. SMITH Science Day 2022. DOI: 10.3205/22smith16
  • Puladi B, Ooms M, Rieg A, Taubert M, Rashad A, Hölzle F, Röhrig R, Modabber A. Development of machine learning and multivariable models for predicting blood transfusion in head and neck microvascular reconstruction for risk-stratified patient blood management. Head Neck. 2023 Apr 18. DOI: 10.1002/hed.27353. Epub ahead of print. PMID: 37070282.
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  • Renner C, Reimer N, Christoph J, Busch H, Metzger P, Boerries M, Ustjanzew A, Boehm D, Unberath P.
    Extending cBioPortal for Therapy Recommendation Documentation in Molecular Tumor Boards: Development and Usability Study. DOI: 10.2196/50017. PMID: 38079196; PMCID: PMC10750236.
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  • Riedel M, Barakat C, Fritsch S, Aach M, Busch J, Lintermann A, Schuppert A, Brynjólfsson S, Neukirchen H, Book M. 2023. Enabling Hyperparameter-Tuning of AI Models for Healthcare using the CoE RAISE Unique AI Framework for HPC. 46th MIPRO ICT and Electronics Convention. DOI: 10.23919/MIPRO57284.2023.10159755
  • Rohde F, Franke M, Christen V, Rahm E., Value-specific Weighting for Record-level Encodings in Privacy-Preserving Record Linkage., In: König-Ries B, Scherzinger S, Lehner W & Vossen G (Hrsg.), BTW 2023, Gesellschaft für Informatik e. V.; 439. DOI: 10.18420/BTW2023-21.
  • Scheible R, Thomczyk F, Blum M, Rautenberg M, Prunotto A, Yazijy S, Boeker M.
    Integrating row level security in i2b2: segregation of medical records into data marts without data replication and synchronization. JAMIA Open 2023; 6:ooad068. DOI: 10.1093/jamiaopen/ooad068.
    Zur Publikation 
  • Sehring J, Dohmen H, Selignow C, Schmid K, Grau S, Stein M, Uhl E, Mukhopadhyay A, Németh A, Amsel D, Acker T. Leveraging Attention-Based Convolutional Neural Networks for Meningioma Classification in Computational Histopathology. Cancers 2023; 15:5190. DOI: 10.3390/cancers15215190.
    Zur Publikation 
  • Schmid K, Sehring J, Németh A, Harter PN, Weber KJ, Vengadeswaran A, Storf H, Seidemann C, Karki K, Fischer P, Dohmen H, Selignow C, von Deimling A, Grau S, Schröder U, Plate KH, Stein M, Uhl E, Acker T, Amsel D. "DistSNE: Distributed computing and online visualization of DNA methylation-based central nervous system tumor classification." Brain Patho 2023; e13228. DOI: 10.1111/bpa.13228. Epub ahead of print.
    Zur Publikation 
  • Schumann A, Gaser C, Sabeghi R, Schulze PC, Festag S, Spreckelsen C, Bär KJ. Using machine learning to estimate the calendar age based on autonomic cardiovascular function. Front Aging Neurosci. 2023 Jan 23;14:899249. DOI: 10.3389/fnagi.2022.899249.
  • Sharafutdinov K, Fritsch SJ, Polzin R, Mayer H, Barakat C, Marx G, Bickenbach J, Schuppert A. 2023. ICU Virtual Patient Modeling Framework. SMITH Science Day 2022. DOI: 10.3205/22smith15
  • Schüttler C, Zerlik M, Gruendner J, Köhler T, Rosenau L, Prokosch H, Sedlmayr B: "Empowering Researchers to Query Medical Data and Biospecimens by Ensuring Appropriate Usability of a Feasibility Tool: Evaluation Study". JMIR Hum Factors 2023;10:e43782. doi: 10.2196/43782 PMID: 37074765
    Zur Publikation
  • Siziba LP, Baier C, Pütz E, Ascherl R, Wendt T, Thome UH, Gebauer C, Genuneit J. 2023 10. A descriptive analysis of human milk dispensed by the Leipzig Donor Human Milk Bank for neonates between 2012 and 2019. Frontiers in Nutrition. DOI: 10.3389/fnut.2023.1233109
  • Thalheim T, Neumann D, Kesselmeier M, Peschel T, Palm J, Meineke F, Schmidt F, Böhmer A, Scherag A, Löffler M. 2023. Die POLAR ETL – ein wegweisender Hürdenlauf vom Idealkonzept zur realen Auswertung. SMITH Science Day 2022. DOI: 10.3205/22smith32
    Zur Publikation
  • Thürmann L, Klös M, Mackowiak SD, Bieg M, Bauer T, Ishaque N, Messingschlager M,... Faessler E, Hahn U, … Herberth G, Kabesch M, Eils R, Trump S, Lehmann I. 2023. 78:1489-1506. Global hypomethylation in childhood asthma identified by genome-wide DNA-methylation swquencing preferentially affects enhancer regions. Allergy.
  • Velasco Cárdenas, R.MH., Brandl, S.M., Meléndez, A.V. et al. Harnessing CD3 diversity to optimize CAR T cells. Nat Immunol 24, 2135–2149 (2023). doi: 10.1038/s41590-023-01658-z
    Zur Publikation
  • Welle F, Stoll K, Gillmann C, Henkelmann J, Prasse G, Kaiser DPO, Kellner E, Reisert M, Schneider HR, Klingbeil J, Stockert A, Lobsien D, Hoffmann KT, Saur D, Wawrzyniak M. Tissue Outcome Prediction in Patients with Proximal Vessel Occlusion and Mechanical Thrombectomy Using Logistic Models. Translational Stroke Research. 2023. DOI: 10.1007/s12975-023-01160-6
  • Wolfien M, Ahmadi N, Fitzer K, Grummt S, Heine KL, Jung IC,  Krefting DK, Kühn A, Peng Y, Reinecke I, Scheel J, Schmidt T, Schmücker P, Schüttler C, Waltemath D, Zoch M, Sedlmayr M. Ten Topics to Get Started in Medical Informatics Research. J Med Internet Res 2023; 25:e45948. DOI: 10.2196/45948.
    Zur Publikation 

2022:

  • Ahmadi N, Peng Y, Wolfien M, Zoch M, Sedlmayr M. "OMOP CDM Can Facilitate Data-Driven Studies for Cancer Prediction: A Systematic Review." Int. J. Mol. Sci 2022; 23:11834. DOI: 10.3390/ijms231911834.
    Zur Publikation 
  • Ahrens PC, Steinbach D, Schmidt, M et al., “Applying Machine Learning to Blood Count Data 
    Predicts Sepsis with ICU Admission.” medRxiv 2022.10.21.22281348; doi: 
    10.1101/2022.10.21.22281348 
    Zur Publikation 
  • Andrikyan W, Jung-Poppe L, Altenbuchner A, et al. Documentation of Drug-Related Problems 
    with ICD-11: Application of the New WHO Code-Set to Clinical Routine Data. J Clin Med. 
    2022;12(1):315. Published 2022 Dec 31. doi:10.3390/jcm12010315 
  • Andrikyan W, Then MI, Gaßmann KG, et al. Use of medication data alone to identify 
    diagnoses and related contraindications: Application of algorithms to close a common 
    documentation gap. Br J Clin Pharmacol. 2022;88(12):5399-5411. doi:10.1111/bcp.15469
  • Arnold N, Ascherl RG, Thome UH., Charts and LMS Tables of Transfontanellar and Transvertical Ear-to-Ear Distances for Gestational Age, Front Pediatr. 2022; 10:838333. DOI: 10.3389/fped.2022.838333 
    Zur Publikation 
  • Bathelt F, Reinecke I, Peng Y, Henke E, Weidner J, Bartos M, Gött R, Waltemath D, Engelmann K, Schwarz PEH, Sedlmayr M. "Opportunities of Digital Infrastructures for Disease Management—Exemplified on COVID-19-Related Change in Diagnosis Counts for Diabetes-Related Eye Diseases" Nutrients 2022; 14,2016. DOI: 10.3390/nu14102016.
    Zur Publikation 
  • Barakat C, Fritsch S, Sharafutdinov K, Ingólfsson G, Schuppert A, Brynjólfsson S, Riedel M. 2021. p. 368-373. Lessons learned on using High-Performance Computing and Data Science Methods towards understanding the Acute Respiratory Distress Syndrome (ARDS). 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO).
  • Beger C, Matthies F, Schäfermeier R, Kirsten T, Herre H, Uciteli A., Towards an Ontology-Based Phenotypic Query Model., Appl. Sci. 2022; 12(10): 5210; DOI: 10.3390/app12105214.
  • Bialke M, Geidel L, Hampf C, Blumentritt A, Penndorf P, Schuldt R, Moser F, Lang S, Werner P, Stäubert S, Hund H, Albashiti F, Gührer J, Prokosch H, Bahls T, Hoffmann W. "A FHIR has been lit on gICS: facilitating the standardised exchange of informed consent in a large network of university medicine." BMC Med Inform Decis Mak 2022; 22:335. DOI: 10.1186/s12911-022-02081-4.
    Zur Publikation
  • Beck J, Blasini R, Michel-Backofen A, Schneider H. 2022. Transforming medication data from the Meona HIS into FHIR resources. GMDS/TMF Jahrestagung 2022. DOI: 10.3205/22gmds115
    Zur Publikation
  • Boeker M, Konhäuser Ph, Krefting D, Winter A: Die digitalen Kompetenzen für die Transformation des Gesundheitswesens. Ansätze und Lösungen der Medizininformatik Initiative (MII). Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 1_2022 (24), p.26-30.
  • Borchert F, Lohr C, Modersohn L, Witt J, Langer T, Follmann M, Gietzelt M, Arnrich B, Hahn U, Schapranow MP. GGPONC 2.0 – The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers, LREC 2022, 2022, p. 3650-3660, http://www.lrec-conf.org/proceedings/lrec2022/pdf/2022.lrec-1.389.pdf
    Zur Publikation
  • Bott O, Spreckelsen C, Themenheft “Künstliche Intelligenz in der Medizin“ – Editorial. Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 2022
  • De Arruda Botelho, M., Graf, M., Placzek, P., König, F., Bötte, F., Stickel, T., Hieber, D.A., 
    Zimmermann, L., Slupina, M., Mohr, C., Biergans, S., Akgün, M., Pfeifer, N., & Kohlbacher, 
    O. (2022). Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using 
    the Personal Health Train (PHT-meDIC). ArXiv, abs/2212.03481.
  • Faller J, Modersohn L, Hahn U. 2022. Annotationsleitlinien für deutschsprachige Medizintexte. Teil 7: Annotation von Sicherheitsaussagen (Faktualität). SMITH Technischer Report 7.
  • Festag S, Denzler J, Spreckelsen C, Generative adversarial networks for biomedical time series forecasting and imputation, Journal of Biomedical Informatics, 2022, 129, DOI: 10.1016/j.jbi.2022.104058
    Zur Publikation 
  • Festag S, Stein G, Büchner T, Shadaydeh M, Denzler J, Spreckelsen C, Outcome Prediction and Murmur Detection in Sets of Phonocardiograms by a Deep Learning-Based Ensemble Approach, Konferenzbeitrag “Computing in Cardiology 2022
    Zur Publikation 
  • Fitzer K, Häuslschmid R, Blasini R, Altun FB, Hampf C, Freiesleben S, Macho P, Prokosch H, Gulden C. "Patient Recruitment System for Clinical Trials: A Mixed-Methods Study about Requirements at 10 University Hospitals." JMIR Med Inf 2022. 10:e28696. DOI: 10.2196/28696.
    Zur Publikation 
  • Frey P, Devisme A, Rose K, Schrempp M, Freihen V, Andrieux G, Boerries M, Hecht A. "SMAD4 mutations do not preclude epithelial-mesenchymal transition in colorectal cancer" Oncogene 2022; 41:824-837. DOI: 10.1038/s41388-021-02128-2.
    Zur Publikation 
  • Fritsch SJ, Blankenheim A, Wahl A, Hetfeld P, Maassen O, Deffge S, Kunze J, Rossaint R, Riedel M, Marx G, Bickenbach J, Attitudes and perception of artificial intelligence in healthcare: A cross-sectional survey among patients, Digital Health, 2022, 8, 1-16, DOI: 10.1177/20552076221116772
    Zur Publikation 
  • Fortmann J, Lutz M, Spreckelsen C, System for Context-Specific Visualization of Clinical Practice Guidelines (GuLiNav): Concept and Software Implementation, JMIR Form Res. 2022; 6(6): e28013, DOI: 10.2196/28013
    Zur Publikation 
  • Haerdtlein A, Boehmer AM, Karsten Dafonte K, Rottenkolber M, Jaehde U, Dreischulte T.  Prioritisation of Adverse Drug Events Leading to Hospital Admission and Occurring during 
    Hospitalisation: A RAND Survey. J Clin Med. 2022;11(15):4254. Published 2022 Jul 22. doi:10.3390/jcm11154254 
  • Härzschel A, Li L, Krenn PW, Szenes-Nagy E, Andrieux G, Bayer E, Pfeifer D, Polcik L, Denk U, Höpner JP, Karabatak E, Danner DJ, Tangermann S, Kenner L, Jumaa H, Greil R, Börries M, Ruppert R, Maity PC, Hartmann TN. Kindlin-3 maintains marginal zone B cells but confines follicular B cell activation and differentiation
    J Leukoc Biol 2022; 111:745-758. DOI: 10.1002/JLB.1HI0621-313R.
    Zur Publikation 
  • Klötgen M, Lauf F, Stäubert S, Meister S, Ammon D, A Trusted Data Sharing Environment based on FAIR Principles and Distributed Process Execution.  In Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies – 2022, Volume 5: HEALTHINF, ISBN 978-989-758-552-4, ISSN 2184-4305, pages 583-589. DOI: 10.5220/0010869800003123
    Zur Publikation 
  • Konsortium Smart Medical Information Technology for Healthcare (SMITH; Herausgeber), Science Day 2022: Abstractbook | 23.11.2022, Abstracts der Poster und Kurzvorträge, 2022; smith.care/wp-content/uploads/2022/11/RZ_SMITH-science-day_abstracts_book_
  • Lang S, Bialke M, Geidel L, Stäubert S, Ammon D, Idris T, Merzweiler A, Römhild J, Neuer nationaler Standard für Patienteneinwilligungen auf Basis von HL7 FHIR. E-HEALTH-COM: Magazin für Health-IT, vernetzte Medizintechnik und Telemedizin 17, 2022;
    Zur Publikation 
  • Langenbruch, Lisa et al. “Bilaterality of temporal EEG findings in limbic encephalitis compared to other mesiotemporal epilepsies - A retrospective cohort study.” Seizure vol. 96 (2022): 98-101. doi:10.1016/j.seizure.2022.02.005
    Zur Publikation 
  • Löbe M, Kamdje-Wabo G, Sinza AC, Spengler H, Strobel M, Tute E., Towards Harmonized Data Quality in the Medical Informatics Initiative – Current State and Future Directions., Stud Health Technol Inform. 2022; 289:240-243. DOI: 10.3233/SHTI210904.
    Zur Publikation 
  • Mang JM, Seuchter S, Gulden C, Schild S, Kraska D, Prokosch HU, Kapsner LA. "DQAgui: a graphical user interface for the MIRACUM data quality assessment tool." BMC Med Inform Decis Mak 2022; 22:213. DOI: 10.1186/s12911-022-01961-z.
    Zur Publikation 
  • Mariño J, Kasbohm E, Struckmann S, Kapsner LA, Schmidt CO. "R Packages for Data Quality Assessments and Data Monitoring: A Software Scoping Review with Recommendations for Future Developments" Applied Scieneces 2022; 26. DOI: 10.3390/app12094238.
    Zur Publikation 
  • Medenwald D, Brunner T, Christiansen H, Kisser U, Mansoorian S, Vordermark D, Prokosch HU, Seuchter SA, Kapsner LA on behalf of our MII research group. "Shift of radiotherapy use during the first wave of the COVID-19 pandemic? An analysis of German inpatient data" Strahlenther Onkol 2022. DOI: 10.1007/s00066-021-01883-1.
    Zur Publikation 
  • Modersohn L, Lohr C, Hahn U. 2022. Annotationsleitlinien für deutschsprachige Medizintexte. Teil 5: Annotation von weiteren medizinischen Entitäten und grundlegenden semantischen Relationen zwischen Entitäten. SMITH Technischer Report 5.
  • Modersohn L, Hahn U. 2022. Annotatinsleitlinien für deutschsprachige Medizintexte. Teil 6: Annotation von zeitlichen Entitäten und Relationen. SMITH Technischer Report 6.
  • Modersohn L, Schulz S, Lohr C, Hahn U, GRASCCO — The First Publicly Shareable, Multiply-Alienated German Clinical Text Corpus, SHTI 2022, 296; 66-72, DOI: 10.3233/SHTI220805
    Zur Publikation 
  • Mueller, Linda et al. “Secondary Prevention in Lower Extremity Artery Disease Patients: Lipid-Lowering Therapy and Long-Term Guideline Adherence.” Journal of clinical medicine vol. 11,22 6838. 19 Nov. 2022, doi:10.3390/jcm11226838
    Zur Publikation
  • Mussawy B, Redeker L, Härterich S, Tröger F, Lüneburg N, Thürmann P, Schmiedl S. 2022. Analyse der Operationalisierbarkeit von vier PIM-Listen in elektronischen Krankenhausroutinedaten aus 13 Universitätskliniken. ADKA-Jahreskongress 2022, Nürnberg.
  • Nies AT, König J, Hofmann U, Kölz C, Fromm MF, Schwab M. Interaction of Remdesivir with Clinically Relevant Hepatic Drug Uptake Transporters. Pharmaceutics. 2021;13(3):369. Published 2021 Mar 10. doi:10.3390/pharmaceutics13030369
  • Palm J, Meineke FA, Przybilla J, Peschel T. "fhircrackr": An R Package Unlocking Fast Healthcare Interoperability Resources for Statistical Analysis. Appl Clin Inform. 2023;14(1):54-64. doi:10.1055/s-0042-1760436
  • Prokosch H.U., Baber R., Bollmann P., Gebhardt M., Gruendner J., Hummel M. Aligning Biobanks and Data Integration Centers Efficiently (ABIDE_MI). Stud Health Technol Inform. May 2022 16;292:37-42. doi: 10.3233/SHTI220317. PMID: 35575846.
  • Redeker L, Mussawy B, Härterich S, Tröger F, Lüneburg N, Thürmann P, Schmiedl S. 2022. Developing of algorithms and assessment of potential implementation of four PIM lists within the POLAR study. 7th German Pharm-Tox Summit.
  • Reinecke I, Kallfelz M, Sedlmayr M, Siebel J, Bathelt F. Evaluation and Challenges of Medical Procedure Data Harmonization to SNOMED-CT for Observational Research. Stud Health Technol Inform 2022; 294:405-406. DOI: 10.3233/SHTI220484.
    Zur Publikation 
  • Riederer I, Mühlau M, Wiestler B et al (2022): „Structured Reporting in Multiple Sclerosis – Consensus-Based Reporting Templates for Magnetic Resonance Imaging of the Brain and Spinal Cord.“ Fortschr Röntgenstr 2022; DOI: 10.1055/a-1867-3942
    Zur Publikation
  • Roschka S, Leddig T, Bullerjahn M, Richter G, Liedtke W, Langanke M, Hoffmann W (2022): "Secondary use of health care data and left‑over biosamples within the ‘Medical Informatics Initiative’ (MII): a quasi‑randomized controlled evaluation of patient perceptions and preferences regarding the consent process." BMC Medical Informatics and Decision Making. 184: p. 1-9. DOI: 10.1186/s12911-022-01922-6.
    Zur Publikation
  • Scheer J, Volkert A, Brich N, Weinert L, Santhanam N, Krone M, Ganslandt T, Boeker M, Nagel T. "Visualization Techniques of Time-Oriented Data for the Comparison of Single Patients With Multiple Patients or Cohorts: Scoping Review." J Med Internet Res 2022; 24:e38041. DOI: 10.2196/38041.
    Zur Publikation 
  • Scheible R, Caliskan D, Fischer P, Thomczyk F, Zabka S, Schneider H, Boeker M, Schulz S, Prokosch HU, Gulden C. AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources – A Technical Case Report. Stud Health Technol Inform 2022; 290:32-36. DOI: 10.3233/SHTI220026. PMID: 35672965.
    Zur Publikation 
  • Scheible R, Strecker P, Yazijy S, Talpa R, Puhl A, Boeker M. A Multilingual Browser Platform for Medical Subject Headings Stud Health Technol Inform 2022; 289:384-387. DOI: 10.3233/SHTI210939.
    Zur Publikation 
  • Schemmann U, Schneider B, Phan-Vogtmann LA, Schäfer D, Scherag A, Spreckelsen C, Winter A: Lernziel- und Kompetenzkataloge für die Aus-, Fort- und Weiterbildung in der Medizinischen Informatik und verwandten Fächern: Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 1_2022 (24), p. 31-35.
  • Schepers J, Fleck J, Schaaf J: „Die Medizininformatikinitiative und seltene Erkrankungen: Routinedaten der nächsten Generation für Diagnose, Therapie und Forschung“, Bundesgesundheitsblatt  2022 · 65:1151–1158 .doi: 10.1007/s00103022-03606-y 
    Zur Publikation 
  • Scherer C, Endres S, Orban M, Kääb S, Massberg S, Winter A, Löbe M, Implementation of a Clinical Trial Recruitment Support System Based on Fast Healthcare Interoperability Resources (FHIR) in a Cardiology Department, Stud Health Technol Inform, 2022;  294:440-444. DOI: 10.3233/SHTI220497
    Zur Publikation
  • Scherag, A., Andrikyan, W., Dreischulte, T. et al. POLAR – „POLypharmazie, Arzneimittelwechselwirkungen und Risiken“ – wie können Daten aus der stationären Krankenversorgung zur Beurteilung beitragen?. Präv Gesundheitsf (2022)
    Zur Publikation
  • Schilling M, Rickmann L, Hutschenreuter G, Spreckelsen C, Reduction of Platelet Outdating and Shortage by Forecasting Demand With Statistical Learning and Deep Neural Networks: Modeling Study., JMIR Medical Informatics, 2022; DOI: 10.2196/29978
    Zur Publikation
  • Schoenthaler M, Fichtner UA;  Boeker M; Zoeller D, Binder B, Prokosch HU, Praus P, Walther T, Glienke M, Horki P. Gratzke C; Farin-Glattacker E.
    A nationwide registry for recurrent urolithiasis in the upper urinary tract – The RECUR study protocol.
    BMC Health Serv Res 2022; 22:1060. DOI: 10.1186/s12913-022-08375-7. 
    Zur Publikation 
  • Schulz S, Boeker M, Prunotto A. "Validation of Multiple Path Translation for SNOMED CT Localisation." Stud Health Technol Inform 2022; 294:961-962. DOI: 10.3233/SHTI220641.
    Zur Publikation 
  • Schüttler C, Jahns R, Prokosch HU, Wach S, Wullich B. "Biobanken, translationale Forschung und Medizininformatik." Urologie 2022; DOI: 10.1007/s00120-022-01850-3.
    Zur Publikation 
  • Sharafutdinov K, Bhat JS, Fritsch SJ, Nikulina K, Samadi ME, Polzin R, Mayer H, Marx G, Bickenbach J, Schuppert A., Application of convex hull analysis for the evaluation of data heterogeneity between patient populations of different origin and implications of hospital bias in downstream machine-learning-based data processing: A comparison of 4 critical-care patient datasets., Frontiers in Big Data, 2022, 5:603429; DOI: 10.3389/fdata.2022.603429.
    Zur Publikation 
  • Spreckelsen C, Boeker M, Schuppert A, Varghese J, Semler S, Künstliche Intelligenz in der Medizininformatik-Initiative. Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 2022
  • Spohr C, Poggio T, Andrieux G, Schönberger K, Cabezas-Wallscheid N, Boerries M, Halbach S, Illert AL, Brummer T. Gab2 deficiency prevents Flt3-ITD driven acute myeloid leukemia in vivo Leukemia 2022; 36:970-982. DOI: 10.1038/s41375-021-01490-0.
    Zur Publikation 
  • Strecker P, Boeker M, Buechner S, Scheible R. "Usability Evaluation of a Modern Multilingual MeSH Browser" Stud Health Technol Inform 2022; 295:37-40. DOI: 10.3233/SHTI220653.
    Zur Publikation
  • Then MI, Andrikyan W, Fromm MF, Maas R. 2022. Clarity and usability of absolute contraindications in the Summary of Product Characteristics / Prescribing Information in international comparison for Germany, UK and US. DPhG Annual Meeting 2022.
  • Then MI, Andrikyan W, Fromm MF, Maas R. Comprehensibility of Contraindications in German, UK and US Summaries of Product Characteristics/Prescribing Information—A Comparative Qualitative and Quantitative Analysis. Journal of Clinical Medicine. 2022; 11(14):4167. doi: 10.3390/jcm11144167
    Zur Publikation
  • Then MI, Andrikyan W, Maas R, Fromm MF. 2022 88(1)226-236. The CredibleMeds® list: Usage of QT interval prolonging drugs in Germany and discordances with prescribing information. British Journal of Clinical Pharmacology. DOI: 10.1111/bcp.14951
    Zur Publikation
  • Then MI, Tümena T, Sledziewska A, Gaßmann KG, Maas R, Fromm MF. Development in Prescriptions of Contraindicated and Potentially Harmful QT Interval-Prolonging Drugs in a Large Geriatric Inpatient Cohort From 2011 to 2021. Clin Pharmacol Ther. 2023;113(2):435-445. doi:10.1002/cpt.2813
  • Tobias Kussel, Torben Brenner, Galina Tremper, Josef Schepers, Martin Lablans and Kay Hamacher: Record Linkage based Patient Intersection Cardinality for Rare Disease Studies using Mainzelliste and Secure Multi-Party Computation. In: BMC Journal of Translational Medicine; DOI 10.1186/s12967-022-03671-6 
    Zur Publikation 
  • Unberath P, Mahlmeister L, Reimer N, Busch H, Boerries M, Christoph J. Searching of Clinical Trials Made Easier in cBioPortal Using Patients‘ Genetic and Clinical Profiles. Appl Clin Inform 2022; 13:363-369. DOI: 10.1055/s-0042-1743560.
    Zur Publikation 
  • Vass A, Reinecke I, Boeker M, Prokosch HU, Gulden C. Availability of Structured Data Elements in Electronic Health Records for Supporting Patient Recruitment in Clinical Trials. Stud Health Technol Inform 2022; 290:130-134. DOI: 10.3233/SHTI220046. PMID: 35672985.
    Zur Publikation
  • Wahram A, Then MI, Gaßmann KG, Tümena T, Dürr P, Fromm MF, Maas R. 2022. Identification of diagnosis-related contraindications based on the medication plan alone. Naunyn-Schmiedeberg’s Archives of Pharmacology / German Pharm-Tox Summit 2022. DOI: 10.1007/s00210-022-02205-7
  • Weisbach L, Schuster AK, Hartmann M, Fromm MF, Maas R, Farker K. 2022. Information deficits in liver-related contraindications – Analysis of clarity and codability in SmPCs/PI of major drug markets. GAA Jahrestagung 2022. DOI: 10.3205/22gaa09
    Zur Publikation
  • Weisbach L, Schuster AK, Hartmann M, Fromm MF, Maas R, Farker K. Inconsistencies and Ambiguities in Liver-Disease-Related Contraindications—A Systematic Analysis of SmPCs/PI of Major Drug Markets. Journal of Clinical Medicine. 2022; 11(7):1933. doi: 10.3390/jcm11071933 
    Zur Publikation 
  • Weisbach L, Schuster AK, Hartmann M, et al. Inconsistencies of absolute drug-drug contraindication reports: Analysis of Summaries of Product Characteristics of commonly prescribed drugs [published online ahead of print, 2023 Apr 1]. Br J Clin Pharmacol. 2023;10.1111/bcp.15730. doi:10.1111/bcp.15730 
  • Welten S, Mou Y, Neumann L, et al. A Privacy-Preserving Distributed Analytics Platform for Health Care Data. Methods Inf Med. 2022;61(S 01):e1-e11. doi:10.1055/s-0041-1740564 
  • Welten S, Hempel L, Abedi M, Mou Y, Jaberansary M, Neumann L, Weber S, Tahar K, Ucer Yediel Y, Löbe M, Decker S, Beyan O, Kirsten T, Multi-Institutional Breast Cancer Detection Using a Secure On-Boarding Service for Distributed Analytics, Appl. Sci. 2022, 12(9), 4336; DOI: 10.3390/app12094336
    Zur Publikation 
  • Wirth FN, Kussel T, Müller A, Hamacher K, Prasser F. EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation. BMC Bioinformatics. 2022 Dec 
    Zur Publikation 
  • Zenker S, Strech D, Ihrig K, Jahns R, Müller G, Schickhardt C, Schmidt G, Speer R, Winkler E, von Kielmansegg SG, Drepper J (2022): "Data protection-compliant broad consent for secondary use of health care data and human biosamples for (bio)medical research: Towards a new German national standard." Journal of Biomedical Informatics, 131 (2022), 104096.
    Zur Publikation

2021:

  • Andrikyan W, Then MI, Gaßmann KG, Tümena T, Dürr P, Fromm MF, Maas R. 2021. Identification of disease-related contraindications based on the medication plan alone – a proof of principal study. DPhG Annual Meeting 2021.
  • Anywar M, Pazmino S, Cheng K Y, Petersen N, Qian H, Rottmann F, Richter T, Bronsch T, Bergh B, Schreiweis B: "Mapping HL7v2 ORU and BAR Messages to openEHR Archetypes." 66. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 12. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e. V. (TMF), 2021. doi: 10.3205/21gmds025.
    Zur Publikation
  • Bauer C, Quante M, Breunis WB, Regina C, Schneider M, Andrieux G, Gorka O, Groß O, Boerries M, Kammerer B, Hettmer S. Lack of Electron Acceptors Contributes to Redox Stress and Growth Arrest in Asparagine-Starved Sarcoma Cells Cancers (Basel) 2021; 13:412. DOI: 10.3390/cancers13030412.
    Zur Publikation 
  • Baumgartl T, Petzold M, Wunderlich M, Hohn M, Archambault D, Lieser M, et al (2021): "In Search of Patient Zero: Visual Analytics of Pathogen Transmission Pathways in Hospitals." IEEE Transactions on Visualization and Computer Graphics (TVCG), 27 (2): p. 711-721-2021
    Zur Publikation
  • Böhmer A, Härdtlein A, Dreischulte T, Jaehde U. 2021. Prioritisation of adverse drug events during hospitalization: A two-stage RAND survey. DPhG Annual Meeting 2021.
  • Böhmer A, Härdtlein A, Rottenkolber M, Pudritz YM, Dreischulte T, Jaehde U (geteilte Erstautorenschaft). 2021. Prioritisation of adverse drug events leading to hospital admission and occurring during hospitalisation: A RAND survey. GAA Jahrestagung 2021. DOI: 10.3205/21gaa02
    Zur Publikation
  • Brix, Tobias J et al. “ODM Clinical Data Generator: Syntactically Correct Clinical Data Based on Metadata Definition.” Studies in health technology and informatics vol. 278 (2021): 35-40. doi:10.3233/SHTI210048
    Zur Publikation
  • Caliskan D, Zierk J, Kraska D, Schulz S, Daumke P, Prokosch HU, Kapsner LA: "First Steps to Evaluate an NLP Tool’s Medication Extraction Accuracy from Discharge Letters." Stud Health Technol Inform 2021; 278: p. 224-230. DOI: 10.3233/SHTI210073.
    Zur Publikation
  • Corrales E, Levit-Zerdoun E, Metzger P, Kowar S, Ku M, Brummer T, Boerries M. "Dynamic transcriptome analysis reveals signatures of paradoxical effect of vemurafenib on human dermal fibroblasts" Cell Commun Signal 2021; 19:123. DOI: 10.1186/s12964-021-00801-3.
    Zur Publikation 
  • Devane J, Ott E, Olinger EG, Epting D, Decker E, Friedrich A, Bachmann N, Renschler G, Eisenberger T, Briem-Richter A, Grabhorn EF, Powell L, Wilson IJ, Rice SJ, Miles CG, Wood K; Genomics England Research Consortium; Trivedi P, Hirschfield G, Pietrobattista A, Wohler E, Mezina A, Sobreira N, Agolini E, Maggiore G, Dahmer-Heath M, Yilmaz A, Boerries M, Metzger P, Schell C, Grünewald I, Konrad M, König J, Schlevogt B, Sayer JA, Bergmann C.
    Progressive liver, kidney, and heart degeneration in children and adults affected by TULP3 mutations – PMC (nih.gov). Am J Hum Genet 2022; 109: 928–943. DOI: 10.1016/j.ajhg.2022.03.015.
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  • Dugas, Martin et al. “Lack of antibodies against seasonal coronavirus OC43 nucleocapsid protein identifies patients at risk of critical COVID-19.” Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology vol. 139 (2021): 104847. doi:10.1016/j.jcv.2021.104847 
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  • Dugas, Martin et al. “Less severe course of COVID-19 is associated with elevated levels of antibodies against seasonal human coronaviruses OC43 and HKU1 (HCoV OC43, HCoV HKU1).” International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases vol. 105 (2021): 304-306. doi:10.1016/j.ijid.2021.02.085
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  • Greulich, Leonard et al. “A Seamless Pseudonymization and Randomization Workflow for REDCap.” Studies in health technology and informatics vol. 281 (2021): 952-956. doi:10.3233/SHTI210319
    Zur Publikation 
  • Gruendner J, Gulden C, Kampf MO, Mate S, Prokosch HU, Zierck J: "A Framework for Criteria-Based Selection and Processing of Fast Healthcare Interoperability Resources (FHIR) Data for Statistical Analysis: Design and Implementation Study." JMIR Med Inform 2021: 9 (4) : e25645. DOI: 10.2196/25645.
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  • Gulden C, Blasini R, Nassirian A, Stein A, Altun F, Kirchner M, Prokosch HU, Boeker M (2021): "Prototypical Clinical Trial Registry Based on Fast Healthcare Interoperability Resources (FHIR): Design and Implementation Study." JMIR Med Inform 2021; 9:e20470. DOI: 10.2196/20470.
    Zur Publikation
  • Grünwald BT, Devisme A, Andrieux G, Vyas F, Aliar K, McCloskey CW, Macklin A, Jang GH, Denroche R, Romero JM, Bavi P, Bronsert P, Notta F, O’Kane G, Wilson J, Knox J, Tamblyn L, Udaskin M, Radulovich N, Fischer SE, Boerries M, Gallinger S, Kislinger T, Khokha R. Spatially confined sub-tumor microenvironments in pancreatic cancer Cell 2021; 184:5577-5592.e18. DOI: 10.1016/j.cell.2021.09.022.
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  • Hampf C, Bialke M, Geidel L, Vass A, Bahls T, Blasini R, Blumentritt A, Boeker M, Bruns C, Jandrig B, Fünfgeld M, Heinrich P, Leddig T, Michel-Backofen A, Pirkl A, Rautenberg M, Simons F, Stahl D, Prokosch HU, Hoffmann W (2021): “A survey on the current status and future perspective of informed consent management in the MIRACUM consortium of the German Medical Informatics Initiative.” BMC Translational Medicine Communications, 2021; 6:7. DOI: 10.1186/s41231-021-00086-1.
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  • Härdtlein A, Böhmer A, Rottenkolber M, Pudritz YM, Gensichen J, Jaehde U, Dreischulte T. 2021. Arzneimitteltherapiesicherheit (AMTS) in der ambulanten Versorgung: Entwicklung von Indikatoren zur Detektion potenziell arzneimittelbedingter Krankenhauseinweisungen in Routinedaten 55. Kongress für Allgemeinmedizin und Familienmedizin (DEGAM). DOI: 10.3205/21degam206
  • Haring E, Andrieux G, Uhl FM, Krausz M, Proietti M, Sauer B, Esser PR, Martin SF, Pfeifer D, Schmitt-Graeff A, Duyster J, Köhler N, Grimbacher B, Boerries M, Aumann K, Zeiser R, Apostolova P. "Therapeutic targeting of endoplasmic reticulum stress in acute graft-versus-host disease" Haematologica 2021;  DOI: 10.3324/haematol.2021.278387. Online ahead of print.
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  • Haring E, Uhl FM, Andrieux G, Proietti M, Bulashevska A, Sauer B, Braun LM, de Vega Gomez E, Esser PR, Martin SF, Pfeifer D, Follo M, Schmitt-Graeff A, Buescher J, Duyster J, Grimbacher B, Boerries M, Pearce EL, Zeiser R, Apostolova P. Bile acids regulate intestinal antigen presentation and reduce graft-versus-host disease without impairing the graft-versus-leukemia effect. Haematologica 2021; 106:2131-2146. DOI: 10.3324/haematol.2019.242990.
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  • Hoefflin R, Harlander S, Abhari BA, Peighambari A, Adlesic M, Seidel P, Zodel K, Haug S, Göcmen B, Li Y, Lahrmann B, Grabe N, Heide D, Boerries M, Köttgen A, Heikenwalder M, Frew IJ. Therapeutic Effects of Inhibition of Sphingosine-1-Phosphate Signaling in HIF-2α Inhibitor-Resistant Clear Cell Renal Cell Carcinoma. Cancers (Basel) 2021; 13:4801. DOI: 10.3390/cancers13194801.
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  • Hoefflin R, Lazarou A, Hess ME, Reiser M, Wehrle J, Metzger P, Frey AV, Becker H, Aumann K, Berner K, Boeker M, Buettner N, Dierks C, Duque-Afonso J, Eisenblaetter M, Erbes T, Fritsch R, Ge IX, Geißler AL, Grabbert M, Heeg S, Heiland DH, Hettmer S, Kayser G, Keller A, Kleiber A, Kutilina A, Mehmed L, Meiss F, Poxleitner P, Rawluk J, Ruf J, Schäfer H, Scherer F, Shoumariyeh K, Tzschach A, Peters C, Brummer T, Werner M, Duyster J, Lassmann S, Miething C, Boerries M, Illert AL, von Bubnoff N. Transitioning the Molecular Tumor Board from Proof of Concept to Clinical Routine: A German Single-Center Analysis. Cancers (Basel) 2021; 13:1151. DOI: 10.3390/cancers13051151.
    Zur Publikation 
  • Hund H, Wettstein R, Heidt CM, Fegeler C (2021): "Executing Distributed Healthcare and Research Processes - The HiGHmed Data Sharing Framework." Studies in Health Technology and Informatics, 278: p. 126-133, 2021.
    Zur Publikation 
  • Hussung S, Akhoundova D, Hipp J, Follo M, Klar RFU, Philipp U, Scherer F, von Bubnoff N, Duyster J, Boerries M, Wittel U, Fritsch RM. Longitudinal analysis of cell-free mutated KRAS and CA 19-9 predicts survival following curative resection of pancreatic cancer. BMC Cancer 2021; 21:49. DOI: 10.1186/s12885-020-07736-x. 
    Zur Publikation 
  • Kapsner LA, Kampf MO, Seuchter SA, Gruendner J, Gulden C, Mate S, Mang JM, Schüttler C, Deppenwiese N, Krause L, Zöller D, Balig J, Fuchs T, Fischer P, Haverkamp C, Holderried M, Mayer G, Stenzhorn H, Stolnicu A, Storck M, Storf H, Zohner J, Kohlbacher O, Strzelczyk A, Schüttler J, Acker T, Boeker M, Kaisers UX, Kestler HA and Prokosch H-U (2021): "Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown." Front. Public Health 8:594117. DOI: 10.3389/fpubh.2020.594117
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  • Kapsner, Lorenz A et al. “Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown.” Frontiers in public health vol. 8 594117. 13 Jan. 2021, doi:10.3389/fpubh.2020.594117
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  • Kapsner LA, Mang JM, Mate S, Seuchter SA, Vengadeswaran A, Bathelt F, Deppenwiese N, Kadioglu D, Kraska D, Prokosch HU: "Linking a Consortium-Wide Data Quality Assessment Tool with the MIRACUM Metadata Repository." Appl Clin Inform 2021; 12: p. 826-835. DOI: 10.1055/s-0041-1733847.
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  • Kapsner LA, Zavgorodnij MG, Majorova SP, Hotz‐Wagenblatt A, Kolychev OV, Lebedev IN, Hoheisel JD, Hartmann A, Bauer A, Mate S, Prokosch H, Haller F, and Moskalev EA: "BiasCorrector: fast and accurate correction of all types of experimental biases in quantitative DNA methylation data derived by different technologies." Int. J. Cancer 2021: p. 1150-1165. ijc.33681. DOI: 10.1002/ijc.33681.
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  • Kesselmeier M, Boeker M, Gantner J, Löffler M, Meineke F, Peschel T, Przybilla J, Scherag A, Schulze S, Schuster J, Zeynalova S, Zöller D. 2021. Biometrical challenges of the Use Case of the Medical Informatics Initiative (MI-I) on „POLypharmacy, drug inter Actions, Risks“ (POLAR_MI). Biometrisches Kolloquium 2021.
  • Kinast, B, Lutz, M, Schreiweis, B: "Telemonitoring of Real-World Health Data in Cardiology: A Systematic Review." Int. J. Environ. Res. Public Health 2021, 18, 9070. doi: 10.3390/ijerph18179070
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  • Kind F, Fassbender TF, Andrieux G, Boerries M, Meyer PT, Ruf J. Early PSA Change after [177Lu]PSMA-617 Radioligand Therapy as a Predicator of Biochemical Response and Overall Survival. Cancers (Basel) 2021; 14:149. DOI: 10.3390/cancers14010149.
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  • Kindermann A, Tute E, Benda S, et al (2021): "Preliminary Analysis of Structured Reporting in the HiGHmed Use Case Cardiology: Challenges and Measures." Studies in Health Technology and Informatics. 278: p. 187-194, 2021.
    Zur Publikation
  • Klann JG, Weber GM, Estiri H, Moal B, Avillach P, Hong C, Castro V, Maulhardt T, Tan ALM, Geva A, Beaulieu-Jones BK, Malovini A, South AM, Visweswaran S, Omenn GS, Ngiam KY, Mandl KD, Boeker M, Olson KL, Mowery DL, Morris M, Follett RW, Hanauer DA, Bellazzi R, Moore JH, Loh NW, Bell DS, Wagholikar KB, Chiovato L, Tibollo V, Rieg S, Li ALLJ, Jouhet V, Schriver E, Samayamuthu MJ, Xia Z, Hutch M, Luo Y, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE) (CONSORTIA AUTHOR), Kohane IS, Brat GA, Murphy SN (2021): "Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data", Journal of the American Medical Informatics Association, 2021, ocab018.  DOI: 10.1093/jamia/ocab018.
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  • Kläsener K, Jellusova J, Andrieux G, Salzer U, Böhler C, Steiner SN, Albinus JB, Cavallari M, Süß B, Voll RE, Boerries M, Wollscheid B, Reth M. CD20 as a gatekeeper of the resting state of human B cells. Proc Natl Acad Sci U S A 2021; 118:e2021342118. DOI: 10.1073/pnas.2021342118.
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  • Kock-Schoppenhauer AK, Schreiweis B, Ulrich H, Reimer N, Wiedekopf J, Kinast B, Busch H, Bergh B, Ingenerf J (2021). "Medical Data Engineering – Theory and Practice." In: Bellatreche L., Chernishev G., Corral A., Ouchani S., Vain J. (eds) Advances in Model and Data Engineering in the Digitalization Era. MEDI 2021. Communications in Computer and Information Science, vol 1481. Springer, Cham. p. 269-284. doi: 10.1007/978-3-030-87657-9_21
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  • Langenbruch, Lisa et al. “Bilaterality of temporal EEG findings in limbic encephalitis compared to other mesiotemporal epilepsies - A retrospective cohort study.” Seizure vol. 96 (2022): 98-101. doi:10.1016/j.seizure.2022.02.005
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  • Lehne M, Schaaf J, Storf H, Martin T, Graeßner H, Geihs S, Lutz I, Tahar K, Krefting D, Berner R, Hebestreit H, Schippers C, Thun S, Schepers J; Rare Diseases in German University Medicine – a Comparison with National Case Statistics; doi: 10.3205/21gmds118. 
    Zur Publikation
  • Lenz S, Hackenberg M, Binder H; The JuliaConnectoR: a functionally oriented interface for integrating Julia in R; arXiv:2005.06334
    Zur Publikation
  • Lenz S, Hess M, Binder H: "Deep generative models in DataSHIELD." BMC Med Res Methodol 2021: 21: 64. DOI: 10.1186/s12874-021-01237-6.
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  • Maier C,  Kapsner LA, Mate S, Prokosch HU, Kraus S: "Patient Cohort Identification on Time Series Data Using the OMOP Common Data Model."Appl Clin Inform 2021; 12: p. 057-064. DOI: 10.1055/s-0040-1721481.
    Zur Publikation
  • Martin T, Tahar K, Lehne M, Hebestreit H, Schepers J, Krefting D, Graeßner H; Problems of finding rare diseases in the documentation of German hospitals; doi:10.3205/21gmds117.  
    Zur Publikation
  • Mate S, Seuchter SA, Ehrenberg K, Deppenwiese N, Zierk J, Prokosch HU, Kraska D, Kapsner LA: "A Multi-User Terminology Mapping Toolbox." Stud Health Technol Inform 2021: p. 278:217-223. DOI: 10.3233/SHTI210072.
    Zur Publikation
  • Melzer G, Maiwald T, Prokosch HU, Ganslandt T (2021): "Leveraging Real-World Data for the Selection of Relevant Eligibility Criteria for the Implementation of Electronic Recruitment Support in Clinical Trials."
    Appl Clin Inform 2021; 12:017-026. DOI: 10.1055/s-0040-1721010. 
    Zur Publikation
  • Nies AT, König J, Hofmann U, Kölz C, Fromm MF, Schwab M. 2021 13(3)369. Interaction of Remdesivir with Clinically Relevant Hepatic Drug Uptake Transporters. Pharmaceutics. DOI: 10.3390/pharmaceutics13030369
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  • Oehm, Johannes et al. “FhirExtinguisher: A FHIR Resource Flattening Tool Using FHIRPath.” Studies in health technology and informatics vol. 281 (2021): 1112-1113. doi:10.3233/SHTI210369
    Zur Publikation
  • Osswald L, Hamarsheh S, Uhl FM, Andrieux G, Klein C, Dierks C, Duquesne S, Braun LM, Schmitt-Graeff A, Duyster J, Boerries M, Brummer T, Zeiser R. "Oncogenic KrasG12D Activation in the Nonhematopoietic Bone Marrow Microenvironment Causes Myelodysplastic Syndrome in Mice" Mol Cancer Res 2021; 19:1596-1608. DOI: 10.1158/1541-7786.MCR-20-0275.
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  • Preciado-Marquez, Daniel et al. “MainzelHandler: A Library for a Simple Integration and Usage of the Mainzelliste.” Studies in health technology and informatics vol. 281 (2021): 233-237. doi:10.3233/SHTI210155
    Zur Publikation  
  • Rajput AM, Gronke A, Johannis W. Semi-automated approach to validate and enrich LOINC codes by FHIR Server. ICMHI 2021. May 2021. doi:10.1145/3472813.3473207
    Zur Publikation  
  • Reimer N, Unberath P, Busch H, Börries M, Metzger P, Ustjanzew A, Renner C, Prokosch HU, Christoph J: "Challenges and Experiences Extending the cBioPortal for Cancer Genomics to a Molecular Tumor Board Platform." Stud Health Technol Inform 2021;287: p. 139-143. DOI: 10.3233/SHTI210833.
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  • Reimer N, Unberath P, Busch H, Ingenerf J: "FhirSpark – Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics." Stud Health Technol Inform 2021; 281: p. 303-307.
    DOI: 10.3233/SHTI210169
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  • Reinecke I, Zoch M, Reich C, Sedlmayr M, Bathelt F: "The usage of OHDSI OMOP – A Scoping Review." Stud Health Technol Inform 2021: p. 283:95-103. DOI: 10.3233/SHTI210546.
    Zur Publikation 
  • Rinaldi E and Thun S (2021): "From OpenEHR to FHIR and OMOP Data Model for Microbiology Findings." Stud Health Technol Inform. 281: p. 402-406, 2021.
    Zur Publikation
  • Rinaldi E, Saas J and Thun S (2021): "Use of LOINC and SNOMED CT with FHIR for Microbiology Data." Stud Health Technol Inform. 278: p. 156-162, 2021. 
    Zur Publikation
  • Sass J, Zabka S, Essenwanger A, Schepers J, Boeker M, Thun S: "Fast Healthcare Interoperability Resources (FHIR®) Representation of Medication Data Derived from German Procedure Classification Codes (OPS) Using Identification of Medicinal Products (IDMP) Compliant Terminology." Stud Health Technol Inform 2021; 278: p. 231-236. DOI: 10.3233/SHTI210074.
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  • Schaaf J, Sedlmayr M, Prokosch HU, Tegtbauer N, Kadioglu D, Schaefer J, Boeker M, Storf H: "Visualization of Similar Patients in a Clinical Decision Support System for Rare Diseases – A Focus Group Study." Stud Health Technol Inform 2021; 278: p. 49-57. DOI: 10.3233/SHTI210050.
    Zur Publikation
  • Schaaf, J., Sedlmayr, M., Sedlmayr, B. et al. Evaluation of a clinical decision support system for rare diseases: a qualitative study. BMC Med Inform Decis Mak 21, 65 (2021).
    DOI: 10.1186/s12911-021-01435-8
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  • Schüttler C, Prokosch HU, Sedlmayr M, Sedlmayr B: "Evaluation of Three Feasibility Tools for Identifying Patient Data and Biospecimen Availability: Comparative Usability Study." JMIR Med Inform 2021;9(7):e25531, DOI: 10.2196/25531.
    Zur Publikation
  • Schüttler J, Mang JM, Kapsner LA, Seuchter SA, Binder H, Zöller D et al (2021): "Letalität von Patienten mit COVID-19: Untersuchungen zu Ursachen und Dynamik an deutschen Universitätsklinika." Anästh. Intensivmed 2021; 62: p. 244–257. DOI: 10.19224/ai2021.244
  • Sedlmayr B, Sedlmayr M, Kroll B, Prokosch HU, Gründner J , Schüttler C. Improving collaborative COVID-19 research of University Hospitals in Germany: Formative usability evaluation of the CODEX-Feasibility Portal. Accepted for Publication in Applied Clinical Informatics.
  • Sicklinger F, Meyer IS, Li X, Radtke D, Dicks S, Kornadt MP, Mertens C, Meier JK, Lavine KJ, Zhang Y, Kuhn TC, Terzer T, Patel J, Boerries M, Schramm G, Frey N, Katus HA, Voehringer D, Leuschner F. Basophils balance healing after myocardial infarction via IL-4/IL-13. J Clin Invest 2021; 131:e136778. DOI: 10.1172/JCI136778.
    Zur Publikation
  • Then MI, Andrikyan W, Maas R, Fromm MF. 2021. Prescription of QT interval prolonging drugs in Germany and discrepancies between their Summary of Product Characteristics and the international CredibleMeds® database. Naunyn-Schmiedeberg’s Archives of Pharmacology / German Pharm-Tox Summit 2022.
  • Then MI, Andrikyan W, Maas R, Fromm MF. 2021. Use of QT interval prolonging drugs in Germany and discrepancies between the Summary of Product Characteristics and the international CredibleMeds® reference list. DPhG Annual Meeting 2021.
  • Ustjanzew A, Desuki A, Ritzel C, Dolezilek AC, Wagner DC, Christoph J, Unberath P, Kindler T, Faber J, Marini F, Panholzer T, Paret C. cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board. BMC Med Inform Dec Mak 2021, 21:358. DOI: 110.1186/s12911-021-01719-z.
    Zur Publikation 
  • Varghese, Julian et al. “Persistent symptoms and lab abnormalities in patients who recovered from COVID-19.” Scientific reports vol. 11,1 12775. 17 Jun. 2021, doi:10.1038/s41598-021-91270-8
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  • Walther T, Farin E, Boeker M, Prokosch HU, Binder B, Praus F, Ploner N, Fichtner UA, Horki P, Haeuslschmid R, Seuchter S, Gratzke C, Schoenthaler M: "RECUR – Aufbau eines automatisierten digitalen Registers für Patient*innen mit rezidivierenden Steinen des oberen Harntraktes." Gesundheitswesen 2021; 83: p. 27-S32. DOI: 10.1055/a-1651-0311.
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  • Wettstein R, Hund H, Kobylinski I,  Fegeler C and Heinze  O (2021): "Feasibility Queries in Distributed Architectures - Concept and Implementation in HiGHmed." Studies in Health Technology and Informatics, 278: p. 134-141, 2021.
    Zur Publikation 
  • Zoch M, Gierschner C, Peng Y, Gruhl M, Leutner LA, Sedlmayr M, Bathelt F: "Adaption of the OMOP CDM for Rare Diseases." Stud Health Technol Inform 2021; 281: p. 138-142. DOI: 10.3233/SHTI210136.
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2020:

  • Becker L, Ganslandt T, Prokosch HU, Newe A (2020): "Applied Practice and Possible Leverage Points for Information Technology Support for Patient Screening in Clinical Trials: Qualitative Study". JMIR Med Inform.
    Zur Publikation
  • Bild R, Bialke M, Buckow K, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Roschka S, Schreiweis B, Stäubert S, Zenker S, Prasser F (2020): "Towards a comprehensive and interoperable representation of consent-based data usage permissions in the German medical informatics initiative". BMC Medical Informatics and Decision Making, 2020, 20:103.
    Zur Publikation
  • Brat GA, Weber GM, Gehlenborg N et al. (2020): "International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.". npj Digi. Med 3, 109 (2020)
    Zur Publikation
  • Buechner P, Hinderer M, Unberath P, Metzger P, Boeker M, Acker T, Haller F, Mack E, Nowak D, Paret C, Schanze D, von Bubnoff N, Wagner S, Busch H, Boerries M, Christoph J. Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal. Diagnostics 2020; 10, 93. DOI:10.3390/diagnostics10020093.
    Zur Publikation 
  • Fechner, Maximilian et al. “Evaluation of openEHR Repositories Regarding Standard Compliance.” Studies in health technology and informatics vol. 270 (2020): 592-596. doi:10.3233/SHTI200229
    Zur Publikation 
  • Fuchs M, Kreutzer FP, Kapsner L.A, Mitzka S, Just A, Perbellini F, Terracciano CM, Xiao K, Geffers R, Bogdan C, Prokosch, HU, Fiedler J, Thum T, Kunz M. Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies. Int J Mol Sci 2020; 21, 4727. DOI: 10.3390/ijms21134727.
    Zur Publikation 
  • Gruendner J, Wolf N, Tögel L, Haller F, Prokosch HU, Christoph J. (2020) Integrating Genomics and Clinical Data for Statistical Analysis by Using GEnome MINIng (GEMINI) and Fast Healthcare Interoperability Resources (FHIR): System Design and Implementation; JMIR 2020;22:e19879.
    Zur Publikation
  • Gruhl M, Reinecke I, Sedlmayr M.(2020). "Specification and Distribution of Vocabularies Among Consortial Partners" Stud Health Technol Inform 2020;270:1393-1394
    Zur Publikation
  • Jaravine V, Balmford J, Metzger P, Boerries M, Binder H, Boeker M (2020): "Annotation of Human Exome Gene Variants with Consensus Pathogenicity" Genes 11 (9), 1076.     
    Zur Publikation 
  • Langenbruch, Lisa et al. “Blood and cerebrospinal fluid immune cell profiles in patients with temporal lobe epilepsy of different etiologies.” Epilepsia vol. 61,10 (2020): e153-e158. doi:10.1111/epi.16688
    Zur Publikation 
  • Lenz S, Hess M, Binder H, Unsupervised deep learning on biomedical data with BoltzmannMachines.jl; doi.org/10.1101/578252
    Zur Publikation
  • Müller M, Petzold M, Wunderlich M, Baumgartl T, Höhn M, Eichel V, ... and von Landesberger T (2020): "Visual analysis for hospital infection control using a RNN model." EuroVis Work. Vis. Ana. (EuroVA). The Eurographics Association, 2020.
    Zur Publikation
  • Ploner N, Prokosch HU. (2020)Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:158-162.
    Zur Publikation 
  • Pugliese P, Knell C, Christoph J (2020) Exchange of Clinical and Omics Data According to FAIR Principles: A Review of Open Source Solutions; Methods Inf Med. 2020;59(S 01):e13-e20
    Zur Publikation 
  • Rau H, Geidel L, Bialke M, Blumentritt A, Langanke M, Liedtke W, Pasewald S, Stahl D, Bahls T, Maier C, Prokosch HU, Hoffmann W.(2020) The generic Informed Consent Service gICS®: implementation and benefits of a modular consent software tool to master the challenge of electronic consent management in research; J Transl Med 18, 287 (2020).
    Zur Publikation 
  • Reinecke I, Gulden C, Kümmel M, Nassirian A, Blasini R, Sedlmayr M.(2020) Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:1393-1394
    Zur Publikation
  • Schaaf J, Prokosch HU,  Boeker M, Schaefer J, Vasseur J, Storf H, Sedlmayr M. (2020) Interviews with experts in rare diseases for the development of clinical decision support system software - a qualitative study; BMC Med Inform Decis Mak 20, 230     
    Zur Publikation 
  • Schaaf J, Sedlmayr M, Prokosch HU, Ganslandt T, Schade-Brittinger C, von Wagner M, Kadioglu D, Schubert K, Lee-Kirsch MA, K. Kraemer BK, Winner B, Mueller T,  Schaefer JR, Wagner TOF, Bruckner-Tuderman L, Tuescher O, Boeker M, Storf H.(2020) The Status Quo of Rare Diseases Centres for the Development of a Clinical Decision Support System – A Cross-Sectional Study; Stud Health Technol Inform 2020;271:176-183
    Zur Publikation 
  • Scheible R, Kadioglu D, Ehl S, Blum M, Boeker M, Folz M, Grimbacher B, Göbel J, Klein C, Nieters A, Rusch S, Kindle G, Storf H. "Enabling External Inquiries to an Existing Patient Registry by Using the Open Source Registry System for Rare Diseases: Demonstration of the System Using the European Society for Immunodeficiencies Registry." JMIR Med Inform 2020; 8:e17420. DOI: 10.2196/17420.
    Zur Publikation 
  • Wettstein R, Merzweiler A, Klass M and Heinze O. (2020): "Using openEHR in XDS.b Environments – Opportunities and Challenges." Studies in Health Technology and Informatics, 272, p. 300, 2020. 
    Zur Publikation 
  • Wulff A, Ballout S, Gietzelt M, Marschollek M, Scheithauer S, and the HiGHmed infection control study group (2020): “A Report on Data Modelling for Infection Control in HiGHmed." Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020.
    Zur Publikation
  • Zabka S, Schulz S, Brunner O, Boeker M. "How versioning of terminology systems can be supported by ontological models – a case study on TNM tumor classification." Applied Ontology, vol. 15, no. 1, pp. 41-60, 2020.  DOI: 10.3233/AO-190220.  
    Zur Publikation 
  • Zierk J, Arzideh F, Kapsner LA, Prokosch HU, Metzler M, Rauh M. "Reference Interval Estimation from Mixed Distributions using Truncation Points and the Kolmogorov-Smirnov Distance (kosmic)." Sci Rep. 2020, 10, 1704. DOI: 10.1038/s41598-020-58749-2.
    Zur Publikation
  • Buechner P, Hinderer M, Unberath P, Metzger P, Boeker M, Acker T, Haller F, Mack E, Nowak D, Paret C, Schanze D, von Bubnoff N, Wagner S, Busch H, Boerries M, Christoph J. "Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal." Diagnostics 2020, 10, 93. DOI:10.3390/diagnostics10020093. 
    Zur Publikation
  • Fuchs M, Kreutzer FP, Kapsner L.A, Mitzka S, Just A, Perbellini F, Terracciano CM, Xiao K, Geffers R, Bogdan C, Prokosch, HU, Fiedler J, Thum T, Kunz M. (2020). "Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies." Int. J. Mol. Sci. 2020, 21, 4727
    Zur Publikation
  • Zabka S, Schulz S, Brunner O, Boeker M. "How versioning of terminology systems can be supported by ontological models – a case study on TNM tumor classification." Applied Ontology 2020; 15:41-60. DOI: 10.3233/AO-190220.
    Zur Publikation 
  • Zacher B, Haller S, Kramer R and Eckmanns T (2020): "A machine learning framework for outbreak detection in infectious disease surveillance systems [poster]." Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020.
  • Zierk J, Krebs A, Rauh M, Metzler M, Löscher A, Strasser E, Krause SW. "Blood counts in adult and elderly individuals: defining the norms over eight decades of life." Br J Haematol. DOI: 10.1111/bjh.16430.
    Zur Publikation 

2019:

  • Aguduri L S, Merzweiler A, Yüksekogul N, Meyer N, Brandner A und Heinze O (2019): "Modeling Clinical Data Transformation for a Medical Data Integration Center: An openEHR Approach." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 2019.
    Zur Publikation 
  • Ammon D, Bietenbeck A, Boeker M, Ganslandt T, Heckmann S, Heitmann K, Sax U, Schepers J, Semler SC, Thun S, Zautke A (2019): "Der Kerndatensatz der Medizininformatik-Initiative – Interoperable Spezifikation am Beispiel der Laborbefunde mittels LOINC und FHIR." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 113-117.
  • Beier K, Schweda M, Schicktanz S (2019): "Taking patient involvement seriously: a critical ethical analysis of participatory approaches in data-intensive medical research". BMC Medical Informatics and Decision Making. 19: p. 90, 2019
    Zur Publikation
  • Bild R, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Schreiweis B , Stäubert S, Zenker S, Bialke M, Prasser F. "Erster Schritt: Im Rahmen der Medizininformatik-Initiative des Bundesforschungsministeriums ist eine elektronische Abbildung von Informationen aus Patienten-Einwilligungserklärungen entwickelt worden" E-HEALTH-COM 2019; 2_3:50-53.
    Zur Publikation 
  • Bott OJ, Semler SC (2019): "Editorial." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 95.
  • Buckow K, Ammon D, Bild R, Boeker M, Ganslandt T, Haarbrandt B, Haferkamp S, Sax U, Schepers J, Schreiweis B, Stenzhorn H (2019): »Interoperabilität – Konvergenz unterschiedlicher Informationsmodelle.« mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 110-112.
  • Daumke P, Heitmann KU, Heckmann S, Martínez-Costa C, Schulz S. "Clinical Text Mining on FHIR" Stud Health Technol Inform 2019 ;264:83-87. DOI: 10.3233/SHTI190188.
    Zur Publikation 
  • Ganslandt T, Neumaier M. "Digital networks for laboratory data: potentials, barriers and current initiatives" Clin Chem Lab Med 2019 ;57:336-342. DOI: 10.1515/cclm-2018-1131.
    Zur Publikation 
  • Gruendner J, Prokosch HU, Schindler S, Lenz S, Binder H (2019): "A Queue-Poll Extension and DataSHIELD: Standardised, Monitored, Indirect and Secure Access to Sensitive Data." Stud Health Technol Inform. 258: 115-119. 
    Zur Publikation
  • Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D. KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services. PLoS ONE 14(10): e0223010.  
    Zur Publikation
  • Gulden C, Kirchner M, Schüttler C, Hinderer M, Kampf M, Prokosch HUP, Toddenroth D (2019): "Extractive summarization of clinical trial descriptions." Int J Med Inform. 2019;129:114-121.   
    Zur Publikation
  • Gulden C, Landerer I, Nassirian A, Altun FB, Andrae J (2019). "Extraction and Prevalence of Structured Data Elements in Free-Text Clinical Trial Eligibility Criteria." Stud Health Technol Inform. 258: 226-230. PubMed PMID: 30942751. 
    Zur Publikation
  • Gulden C, Mate S, Prokosch HU, Kraus S; Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-3 
    Zur Publikation
  • Hampf C, Bahls T, Hund H, Drepper J, Lablans M, Speer R (2019): "Record Linkage: Optionen für standortübergreifende Datenzusammenführungen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 117-121. 
  • Hasselblatt H, Andrae J, Tassoni A, Fitzer K, Bahls T, Prokosch HU, Boeker M (2019): "Establishing an Interoperable Clinical Trial Information System Within MIRACUM." Stud Health Technol Inform. 258: 216-220. 
    Zur Publikation 
  • Hemmer B, Börries M, Christoph J, Marx G, Maaßen O, Schuppert A, Scheithauer S (2019): "Die klinischen Anwendungsbeispiele (Use Cases) der vier MII-Konsortien." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 98-102.
  • Kampf MO, Kraska D, Prokosch HU (2019): "An Analysis of Erlangen University Hospital’s Billing Data on Utility-Based De-Identification." Stud Health Technol Inform. 258: 70-74.        
    Zur Publikation
  • Kapsner LA, Kampf MO, Seuchter SA, Kamdje-Wabo G, Gradinger T, Ganslandt T, Mate S, Guendner J, Kraska D, Prokosch HU. Moving Towards an EHR Data Quality Framework: The MIRACUM Approach. Stud Health Technol Inform. 2019;267: p.247-253.   
    Zur Publikation
  • Kindermann A, Stepanova E, Hund H, Geis N, Malone B and Dieterich C (2019): "MedEx - Data Analytics for Medical Domain Experts in Real-Time." Studies in Health Technology and Informatics. 267: p. 142-149, 2019.
    Zur Publikation
  • Lenz S, Hess M, Binder H. "Unsupervised deep learning on biomedical data with BoltzmannMachines.jl
    Preprint Server bioRxiv."
    Zur Publikation 
  • Mate S, Bürkle T, Kapsner LA, Toddenroth D, Kampf M, Sedlmayr M, Castellanos I, Prokosch HU, Kraus S.A Method for the Graphical Modeling of Relative Temporal Constraints. J Biomed Inform. 2019, 100. doi: 10.1016/j.jbi.2019.103314. 
    Zur Publikation
  • Öfelein M, Reichold M, Maier C, Prokosch HU. Designing a Framework of Components to Support Patient Engagement in Research. Stud Health Technol Inform. 2019;267:20-27.                 
    Zur Publikation 
  • Richter-Pechanski P, Amr A, Katus HA, Dieterich C (2019): " Deep Learning Approaches Outperform Conventional Strategies in De-Identification of German Medical Reports." Studies in Health Technology and Informatics. 267: p. 101-109, 2019
    Zur Publikation
  • Sargeant A, von Landesberger T, Baier C, Bange F, Dalpke A, Eckmanns T et al. (2019): "Early Detection of Infection Chains & Outbreaks: Use Case Infection Control."
    ICT for Health Science Research, Stud Health Technol Inform. 258: p. 245-246, 2019
    Zur Publikation
  • Schmücker P, Schemmann U, Winter A, Bott OJ, Knaup-Gregori P, Lautenbacher H, Phan-Vogtmann LA, Scherag A, Sohrabi K, Spreckelsen C (2019): "Aus-, Fort- und Weiterbildung in der Medizininformatik-Initiative." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 102-105.
  • Schneiderheinze H, Prokosch HU, Apel H, Bellut L, Wullich B, Trollmann R, Schüttler C. Development and usability analysis of a multimedia eConsent solution. Stud Health Technol Inform. 2019; 267: 297-303.    
    Zur Publikation 
  • Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T (2019): "Das Datenintegrationszentrum – Ausgangspunkt für die datengetriebene medizinische Forschung und Versorgung." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 106-110.
  • Semler SC (2019): "Die Medizininformatik-Initiative als Impulsgeber für Standardisierung und Datennutzung im deutschen Gesundheitswesen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 96-98.
  • Sommer M, Kirchner M, Gulden C, Egloffstein S, Lux MP, Beckmann MW, Mackensen A, Prokosch HU (2019). "Design and Implementation of a Single Source Multipurpose Hospital-Wide Clinical Trial Registry." Stud Health Technol Inform. 258: 164-168.  
    Zur Publikation
  • Unberath P, Knell C, Prokosch HU, Christoph J (2019). "Developing New Analysis Functions for a Translational Research Platform: Extending the cBioPortal for Cancer Genomics." Stud Health Technol Inform. 258: 46-50.    
    Zur Publikation
  • Vengadeswaran A, Neuhaus P, Hegselmann S, Storf H, Kadioglu D. Semantically annotated Metadata: Interconnecting Samply.MDR and MDM-Portal. Stud Health Technol Inform. 2019;267:86-92.
    Zur Publikation
  • Vey J, Kapsner LA, Fuchs M, Unberath P, Veronesi G, Kunz M. A Toolbox for Functional Analysis and the Systematic Identification of Diagnostic and Prognostic Gene Expression Signatures Combining Meta-Analysis and Machine Learning.  Cancers 2019, 11, 1606; doi:10.3390/cancers11101606.
    Zur Publikation 
  • von Landesberger T, Wunderlich M, Baumgartl T, Höhn M, Marschollek M, Seithauer S (2019): "Visual-Interactive Exploration of Pathogen Outbreaks in Hospitals." EuroVis (Posters): p. 9-11, 2019
    Zur Publikation
  • Walther D, Paret C, Ritzel C, Büchner P, Unberath P, Maier W, Metzger P, Christoph J, Storf H, Boerries M, Wagner S. "Definition of an annotation pipeline for a molecular tumor board focused on the processing of the result and oncological drugs in terms of usability and approval status." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS). Dortmund, 08.-11.09.2019. Düsseldorf: German Medical Science GMS Publishing House; 2019. DocAbstr. 283. doi: 10.3205/19gmds179
  • Wulff A, Sommer KK, Ballout S, HiGHmed Consortium, Haarbrandt B, Gietzelt M (2019): "A Report on Archetype Modelling in a Nationwide Data Infrastructure Project." Studies in Health Technology and Informatics. 258: p. 146-150, 2019
    Zur Publikation
  • Wunderlich M, Block I, von Landesberger T, Petzold M, Marschollek M, Scheithauer S (2019): "Visual Analysis of Probabilistic Infection Contagion in Hospitals." Vision, Modeling, and Visualization.
    p. 143-150, 2019
    Zur Publikation
  • Yüksekogul N, Meyer N, Aguduri L S, Merzweiler A and Heinze O (2019): "Implementing ETL-processes for a Medical Data Integration Center - First experiences from the Heidelberg University Hospital." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 2019.
    Zur Publikation
  •  Zabka S, Ammon D, Ganslandt T, Gewehr J, Haverkamp C , Kiefer S, Lautenbacher H, Löbe M, Thun S, Boeker M. "Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP)." Proceedings of the Joint Ontology Workshops 2019, Episode V: The Styrian Autumn of Ontology, Graz, Austria, September 23-25, 2019. Edited by Adrien Barton, Selja Seppälä, Daniele Porello, Vol-2518.
    Zur Publikation 
  • Zacher B, Czogiel (2019): "Supervised learning improves disease outbreak detection." Robert Koch Institute, Department of Infectious Diseases, 2019.
    Zur Publikation 

2018:

  • Bietenbeck A, Boeker M, Schulz S. "NPU, LOINC, and SNOMED CT: a comparison of terminologies for laboratory results reveals individual advantages and a lack of possibilities to encode interpretive comments" Journal of Laboratory Medicine 2018; 42: 267-275. DOI: 10.1515/labmed-2018-0103.
    Zur Publikation 
  • Ganslandt T, Boeker M, Löbe M, Prasser F, Schepers J, Semler SC, Thun S, Sax U (2018). "Der Kerndatensatz der Medizininformatik-Initiative: Ein Schritt zur Sekundärnutzung von Versorgungsdaten auf nationaler Ebene." Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), Heft 1, März 2018, Jahrgang 20.
    Zur Publikation
  • Gehring S, Eulenfeld R (2018): "German Medical Informatics Initiative: Unlocking Data for Research and Health Care." Methods of Information in Medicine.  57(S 01): e46–e49, 2018
    Zur Publikation
  • Gulden C, Mate S, Prokosch HU, Kraus S. "Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping" Stud Health Technol Inform 2018; 253:3-7. DOI: 10.3233/978-1-61499-896-9-3.
    Zur Publikation 
  • Haarbrandt B et al. (2018): "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine. 57, e66–e81, 2018.  
    Zur Publikation
  • Haarbrandt B, Schreiweis B, Rey S, Sax U, Scheithauer S, Rienhoff O, Knaup-Gregori P, Bavendiek U, Dieterich C, Brors B, Kraus I, Thoms CM, Jäger D, Ellenrieder V, Bergh B, Yahyapour R, Eils R, Consortium HiGHmed, Marschollek M (2018): "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.  
    Zur Publikation
  • Haux R  (2018): "Health Information Systems – from Present to Future? The German Medical Informatics Initiative." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.   
    Zur Publikation
  • Haverkamp C, Ganslandt T, Horki P, Boeker M, Dörfler A, Schwab S, Berkefeld J, Pfeilschifter W, Niesen WD, Egger K, Kaps M, Brockmann MA, Neumaier-Probst E, Szabo K, Skalej M, Bien S, Best C, Prokosch HU, Urbach H.
    Regional Differences in Thrombectomy Rates: Secondary use of Billing Codes in the MIRACUM (Medical Informatics for Research and Care in University Medicine) Consortium
    Clin Neuroradiol 2018; 28:225-234.8. DOI: 10.1007/s00062-017-0656-y.
    Zur Publikation 
  • Hinderer M, Boerries M, Boeker M, Neumaier M, Loubal FP, Acker T, Brunner M, Prokosch HU, Christoph J.; Implementing Pharmacogenomic Clinical Decision Support into German Hospitals.; Stud Health Technol Inform. 2018;247:870-874. Doi: 10.3233/978-1-61499-852-5-870
  • Kadioglu D, Breil B, Knell C, Lablans M, Mate S, Schlue D, Serve H, Storf H,  Ückert F,  Wagner T, Weingardt P, Prokosch HU. "Samply.MDR – A Metadata Repository and Its Application in Various Research Networks" Stud Health Technol Inform 2018; 253:50-54. DOI: 10.3233/978-1-61499-896-9-50.
    Zur Publikation 
  • Knaup P, Deserno T, Prokosch HU, Sax U (2018). "Implementation of a National Framework to Promote Health Data Sharing. The German Medical Informatics Initiative." Yearbook of Medical Informatics, Georg Thieme Verlag KG Stuttgart. 27, 1, p. 302–304, 2018     
    Zur Publikation
  • Lenz S, Zöller D, Hess M, Binder H; Architectures for distributed privacy-preserving deep learning; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 63. Jahrestagung der GMDS, Osnabrück, 02.-06.09.2018. Düsseldorf: German Medical Science GMS Publishing House; 2018. DocAbstr. 207, DOI: 10.3205/18gmds097
    Zur Publikation
  • Maier C, Lang L, Storf H, Vormstein P, Bieber R, Bernarding J, Herrmann T, Haverkamp C, Horki P, Laufer J, Berger F, Höning G, Fritsch HW, Schüttler J, Ganslandt T, Prokosch HU, Sedlmayr M. "Towards Implementation of OMOP in a German University Hospital Consortium" Appl Clin Inform 2018; 9:54-61. DOI: 10.1055/s-0037-1617452 .
    Zur Publikation 
  • Parciak M, et al. (2018): " PROV@TOS, a Java Wrapper To Capture Provenance for Talend Open Studio Jobs."  presented at the 63. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 2018             
    Zur Publikation 
  • Prasser F, Kohlbacher O, Mansmann U, Bauer B, Kuhn K (2018). "Data Integration for Future Medicine (DIFUTURE). An Architectural and Methodological Overview." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.      
    Zur Publikation
  • Prokosch HU, Acker T, Bernarding J, Binder H, Boeker M, Boerries M, Daumke P, Ganslandt T, Hesser J, Höning G, Neumaier M, Marquardt K, Renz H, Rothkötter HJ, Schade-Brittinger C Schmücker P, Schüttler J, Sedlmayr M, Serve H, Sohrabi K, Storf H (2018). "MIRACUM: Medical Informatics in Research and Care in University Medicine. A Large Data Sharing Network to Enhance Translational Research and Medical Care." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.       
    Zur Publikation 
  • Richter-Pechanski P, Riezler S, Dieterich C (2018): " De-Identification of German Medical Admission Notes." Studies in Health Technology and Informatics. 253: p. 165-169, 2018
    Zur Publikation
  • Schoenthaler M, Boeker M, Horki P.
    How to compete with Google and Co.: big data and artificial intelligence in stones
    Curr Opin Urol 2018; 29:135-143 DOI: 10.1097/MOU.0000000000000578.
    Zur Publikation 
  • Schreiweis B, Bronsch T, Merzweiler A, Bergh B (2018): "Implementing Modular Research Consents Using IHE Advanced Patient Privacy Consents." Studies in Health Technology and Informatics, p. 840–844, 2018.
    Zur Publikation 
  • Sedlmayr M, Prokosch HU. "Datenaustausch in der Forschung via OMOP/OHDSI" EHEALTHCOM 4/18, COMPLEX|Medizininformatik 34-37, Juni 2018.
    Zur Publikation 
  • Semler SC, Wissing F, Heyder R (2018). "German Medical Informatics Initiative. A National Approach to Integrating Health Data from Patient Care and Medical Research." Methods of Information in Medicine. 57(S 01): e50–e56, 2018          
    Zur Publikation 
  • Treppner M, Lenz S, Binder H, Zöller D; Modeling Activity Tracker Data Using Deep Boltzmann Machines; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-155
  • Winter A, Stäubert S, Ammon D, Aiche S, Beyan O, Bischoff V, Daumke P, Decker S, Funkat G, Gewehr J, de Greiff A, Haferkamp S, Hahn U, Henkel A, Kirsten T, Klöss T, Lippert J, Löbe M, Lowitsch V, Maassen O, Maschmann J, Meister S, Mikolajczyk R, Nüchter M, Pletz M, Rahm E, Riedel M, Saleh K, Schuppert A, Smers S, Stollenwerk A, Uhlig S, Wendt T, Zenker S, Fleig W, Marx G, Scherag A, Löffler M (2018): "Smart Medical Information Technology for Healthcare (SMITH). Data Integration based on Interoperability Standards." Methods of Information in Medicine,  57(S 01), Georg Thieme Verlag KG Stuttgart. 
    Zur Publikation
  • Wulff A, Haarbrandt B, Marschollek M (2018): “Clinical Knowledge Governance Framework for Nationwide Data Infrastructure Projects." Studies in Health Technology and Informatics. 248, p. 196-203, 2018
    Zur Publikation

2017:

  • Christoph J, Knell C, Bosserhoff A, Naschberger E, Stürzl M, Rübner M, Seuss H, Ruh M, Prokosch HU, Sedlmayr B. "Usability and Suitability of the Omics-Integrating Analysis Platform tranSMART for Translational Research and Education" ACI 2017; 8:1173-1183. DOI: 10.4338/ACI-2017-05-RA-0085.
    Zur Publikation 
  • Christoph J, Knell C, Naschberger E, Stürzl M, Maier C, Prokosch HU, Sedlmayr M. "Two Years of tranSMART in a University Hospital for Translational Research and Education" Stud Health Technol Inform. 2017 ;236:70-79. DOI: 10.3233/978-1-61499-759-7-70.
    Zur Publikation 
  • Hinderer M, Boeker M, Wagner SA, Lablans M, Newe S, Hülsemann JL, Neumaier M, Binder H, Renz H, Acker T, Prokosch HU, Sedlmayr M.; Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development.; BMC Med Inform Decis Mak. 2017 Jun 6;17(1):81. doi: 10.1186/s12911-017-0480-y. PMID: 28587608.
  • Hinderer M, Boerries M, Haller F, Wagner S, Sollfrank S, Acker T, Prokosch HU, Christoph J.; Supporting Molecular Tumor Boards in Molecular-guided Decision-making - the Current Status of Five German University Hospitals.; Stud Health Technol Inform. 2017;236:48-54. doi: 10.3233/978-1-61499-759-7-48. PMID: 28508778.
  • Knell C, Sedlmayr M, Christoph J. "Developing Interactive Plug-ins for tranSMART Using the SmartR Framework: The Case of Survival Analysis" Stud Health Technol Inform. 2017; 236:375-382. DOI: 10.3233/978-1-61499-759-7-375.
    Zur Publikation 
  • Prabhune, A, Stotzka, Gertz, M., Hesser, J. "Managing Provenance for Medical Datasets An Example Case for Documenting the Workflow for Image Processing" HEALTHINF 2017:236-243. DOI: 10.5220/0006109402360243.
    Zur Publikation