Publications

2024:

• Albashiti, F., Thasler, R., Wendt, T. et al. Die Datenintegrationszentren – Von der Konzeption in der Medizininformatik-Initiative zur lokalen Umsetzung in einem Netzwerk Universitätsmedizin. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03879-5 
  To the publication
• Ammon, D., Kurscheidt, M., Buckow, K. et al. Arbeitsgruppe Interoperabilität: Kerndatensatz und Informationssysteme für Integration und Austausch von Daten in der Medizininformatik-Initiative. Bundesgesundheitsbl  (2024). doi: 10.1007/s00103-024-03888-4 
  To the publication
• Ammon D. Gesundheitsdaten in Forschung und Wissenschaft. In: Health Data Management. Schlüsselfaktor für erfolgreiche Krankenhäuser (2024). doi: 10.1007/978-3-658-43236-2_16
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• Bathelt F, Marx G, Sedlmayr M. 2022. 91:49-52. Digitale FortschrittsHubs Gesundheit. Der Weg der Medizininformatik-Initiative von Universitätskliniken zu nicht-universitären Leistungserbringern. KU 4-2022.
• Bayas, A., Mansmann, U., Ön, B. I., Hoffmann, V. S., Berthele, A., Mühlau, M., Kowarik, M. C., Krumbholz, M., Senel, M., Steuerwald, V., Naumann, M., Hartberger, J., Kerschensteiner, M., Oswald, E., Ruschil, C., Ziemann, U., Tumani, H., Vardakas, I., Albashiti, F., Kramer, F., … ProVal-MS study group (2024). Prospective study validating a multidimensional treatment decision score predicting the 24-month outcome in untreated patients with clinically isolated syndrome and early relapsing-remitting multiple sclerosis, the ProVal-MS study. Neurological research and practice, 6(1), 15.. doi: 10.1186/s42466-024-00310-x.
  To the publication
• Beliën, J., Beusink, M., Boeker, M., Boiten, J.-W., Bolding, N., Buckow, K., Crameri, K., Drepper, J., Kleinert, P., Ganslandt, T., Geiger, T. R., Prokosch, H.-U., Sax, U., Scherag, A., Schug, S. H., Semler, S. C., Steiner, M., Wissing, F., & Zenker, S. (2024). Transnational health care research – carefully connecting the dots towards a European Health Data Space. Zenodo. doi: 10.5281/zenodo.12607200
  To the publication
• Blasini, Romina et al. “Evaluation of Eligibility Criteria Relevance for the Purpose of IT-Supported Trial Recruitment: Descriptive Quantitative Analysis.” JMIR formative research vol. 8 e49347. 31 Jan. 2024. doi:10.2196/49347 
  To the publication
• Boehm D, Strantz C, Christoph J, Busch H, Ganslandt T, Unberath P. Data Visualization Support for Tumor Boards and Clinical Oncology: Protocol for a Scoping Review. JMIR Res Protoc (2024); 13; e53627. doi: 10.2196/53627
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• Boeker, M., Zöller, D., Blasini, R. et al. Effectiveness of IT-supported patient recruitment: study protocol for an interrupted time series study at ten German university hospitals. Trials 25, 125 (2024). doi: 10.1186/s13063-024-07918-z 
  To the publication
• Borchert F, Llorca I, Schapranow MP. 2024. vol. 2024. Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database. DOI: 10.1093/database/baae067
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• Cheng KY, Pazmino S, Bergh B, Lange-Hegermann M, Schreiweis B. An Image Retrieval Pipeline in a Medical Data Integration Center. Stud Health Technol Inform. 2024 Jan 25;310:1388-1389. doi: 10.3233/SHTI231208. PMID: 38269660.
• Cheng KY, Pazmino S, Qian H, Bergh B, Schreiweis B. Structured Data Retrieval and Analysis of HL7 v2 Messages with Elasticsearch. Stud Health Technol Inform. 2024 Jan 25;310:1464-1465. doi: 10.3233/SHTI231246. PMID: 38269698. 
• Gulden, Christian & Macho, Philipp & Reinecke, Ines & Strantz, Cosima & Prokosch, Hans-Ulrich & Blasini, Romina. (2024). recruIT: A cloud-native clinical trial recruitment support system based on Health Level 7 Fast Healthcare Interoperability Resources (HL7 FHIR) and the Observational Medical Outcomes Partnership Common Data Model (OMOP CDM). Computers in Biology and Medicine. 174. doi: 108411. 10.1016/j.compbiomed.2024.108411. 
  To the publication
• Hahn, Udo et al. “Final Report on the German Clinical Reference Corpus 3000PA.” Studies in health technology and informatics vol. 310 (2024): 599-603. doi:10.3233/SHTI231035
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• Kirsten, T., Kleinert, P., Gebhardt, M. et al. Grundlagen für die wissenschaftliche Nutzung umfangreicher Versorgungsdaten in Deutschland – Ergebnisse der AG Data Sharing der Medizininformatik-Initiative. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03880-y 
  To the publication 
• Knaup-Gregori, P., Boeker, M., Kirsten, T. et al. Kompetenzentwicklung in der Medizininformatik-Initiative (MII) – Lehrangebote für einen souveränen und sicheren Umgang mit medizinischen Daten. Bundesgesundheitsbl (2024). doi:10.1007/s00103-024-03881-x
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• Krefting, D., Bavendiek, U., Fischer, J. et al. Die digitalen Fortschrittshubs Gesundheit – Gemeinsame Datennutzung über die Universitätsmedizin hinaus. Bundesgesundheitsbl (2024). doi:10.1007/s00103-024-03883-9
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• Loeffler, M., Maas, R., Neumann, D. et al. INTERPOLAR – prospektive, interventionelle Studien im Rahmen der Medizininformatik-Initiative zur Verbesserung der Arzneimitteltherapiesicherheit in der Krankenversorgung. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03890-w 
  To the publication
• Marschollek, M., Marquet, M., Reinoso Schiller, N. et al. Automatisierte Surveillance und Risikovorhersage mit dem Ziel einer risikostratifizierten Infektionskontrolle und -prävention (RISK Prediction for Risk-stratified Infection Control and Prevention). Bundesgesundheitsbl (2024). doi:10.1007/s00103-024-03882-w
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• Metzger, P., Boerries, M. Das Verbundprojekt „Personalisierte Medizin für die Onkologie“ (PM4Onco) als Teil der Medizininformatik-Initiative (MII). Bundesgesundheitsbl  (2024). doi:10.1007/s00103-024-03886-6
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• Metzger P, Gräßel L, Illert L, Boerries M Sondersituation der Daten in der Onkologie. Die Onkologie | Ausgabe 5/2024. doi:  10.1007/s00761-023-01468-w
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• Modersohn, Luise, and Udo Hahn. “Influence of Context in Transformer-Based Medication Relation Extraction.” Studies in health technology and informatics vol. 310 (2024): 669-673. doi:10.3233/SHTI231049 
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• Molinnus D, Kurth A, Lowitsch V, Marx G, Bickenbach J. 2023 302366-367. Towards an Advanced Digital Infrastructure Within the Non-University Sector Demonstrated by the PICOS App. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230143
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• Sadeghi S, Hempel L, Rodemund N, Kirsten T. 202414(1)11438. Salzburg Intensive Care database (SICdb): a detailed exploration and comparative analysis with MIMIC-IV. Scientific Reports. doi: 10.1038/s41598-024-61380-0 
  To the publication
• Schreiweis B, Ulrich H, Lehmann H, Kock-Schoppenhauer A, Kinast B, Bergh B, Die Wissensmanagementplattform für Versorgung und Forschung am Universitätsklinikum Schleswig-Holstein – Ein Praxisbeispiel, Health Data Management: Schlüsselfaktor für erfolgreiche Krankenhäuser, V. Henke, G. Hülsken, H. Schneider, and J. Varghese, Eds., Wiesbaden: Springer Fachmedien Wiesbaden, 2024, pp. 689-701. doi: 10.1007/978-3-658-43236-2_58
  To the publication
• Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T, Datenintegrationszentren (DIZ) für eine bessere Vernetzung von Krankenversorgung und Forschung, Health Data Management: Schlüsselfaktor für erfolgreiche Krankenhäuser, V. Henke, G. Hülsken, H. Schneider, and J. Varghese, Eds., Wiesbaden: Springer Fachmedien Wiesbaden, 2024, pp. 497-506. doi: 10.1007/978-3-658-43236-2_42
  To the publication
• Sedlmayr, M., Semler, S.C. Die Medizininformatik-Initiative als Wegbereiter für die datengetriebene Gesundheitsforschung in Deutschland. Bundesgesundheitsbl  (2024). doi: 10.1007/s00103-024-03885-7
  To the publication
• Semler, S.C., Boeker, M., Eils, R. et al. Die Medizininformatik-Initiative im Überblick – Aufbau einer Gesundheitsforschungsdateninfrastruktur in Deutschland. Bundesgesundheitsbl  (2024). doi: 10.1007/s00103-024-03887-5 
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• Ulrich H, Anywar M, Kinast B, Schreiweis B. Large-Scale Standardized Image Integration for Secondary Use Research Projects. Stud Health Technol Inform. 2024 Jan 25;310:174-178. doi: 10.3233/SHTI230950. PMID: 38269788. 
• Waltemath, D., Beyan, O., Crameri, K. et al. FAIRe Gesundheitsdaten im nationalen und internationalen Datenraum. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03884-8
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• Welten, S., de Arruda Botelho Herr, M., Hempel, L., Hieber, D., Placzek, P., Graf, M., Weber, S., Neumann, L., Jugl, M., Tirpitz, L., Kindermann, K., Geisler, S., Bonino da Silva Santos, L. O., Decker, S., Pfeifer, N., Kohlbacher, O., & Kirsten, T. (2024). A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis. Scientific data, 11(1), 663. 10.1038/s41597-024-03450-6
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• Zenker S, Strech D, Jahns R, Müller G, Prasser F, Schickhardt C, Schmidt G, Semler SC, Winkler E, Drepper J. National standardisierter Broad Consent in der Praxis: erste Erfahrungen, aktuelle Entwicklungen und kritische Betrachtungen [Nationally standardized broad consent in practice: initial experiences, current developments, and critical assessment]. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2024 Apr 19. German. doi: 10.1007/s00103-024-03878-6. Epub ahead of print. PMID: 38639817.
• Zöller, D., Haverkamp, C., Makoudjou, A. et al. Alpha-1-antitrypsin-deficiency is associated with lower cardiovascular risk: an approach based on federated learning. Respir Res 25, 38 (2024). doi: 10.1186/s12931-023-02607-y 
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2023:

• Barakat C, Aach M, Schuppert A, Brynjólfsson S, Fritsch S, Riedel M., Analysis of Chest X-ray for COVID-19 Diagnosis as a Use Case for an HPC-Enabled Data Analysis and Machine Learning Platform for Medical Diagnosis Support., diagnostics. 2023; 13(3):391. DOI: 10.3390/diagnostics13030391.
  To the publication
• Barakat CS, Sharafutdinov K, Busch J, Saffaran S, Bates DG, Hardman JG, Schuppert A, Brynjólfsson S, Fritsch S, Riedel M. Developing an Artificial Intelligence-Based Representation of a Virtual Patient Model for Real-Time Diagnosis of Acute Respiratory Distress Syndrome. Diagnostics (Basel). 2023 Jun 17;13(12):2098. doi: 10.3390/diagnostics13122098. PMID: 37370993.
  To the publication
• Beger C, Boehmer AM, Mussawy B, Redeker L, Matthias F, Schäfermeier R, Härdtlein A, Dreischulte T, Neumann D, Uciteli A. 2023 307. Modelling Adverse Events with the TOP Phenotyping Framework. German Medical Data Sciences 2023. DOI: 10.3233/SHTI230695
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• Beger C, Matthies F, Schäfermeister R, Uciteli A. 2023. Model-driven execution of phenotype algorithms – introduction of the Terminology- and Ontology-based Phenotyping Framework. GMS Medizinische Informatik, Biometrie und Epidemiologie. DOI: 10.3205/mibe000256
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• Bickenbach J, Schuppert A, Scherag A, Kao J, Bleilevens A, Lowitsch V, Marx G. 2023. ASIC Daten und App Usage. SMITH Science Day 2022. DOI: 10.3205/22smith13
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• Bott OJ, Berger U, Egbert N, Herrmann C, Schneider B, Sellemann B, Spreckelsen C, Strahwald B, Varghese J, Winter A. 2023 302438-42. On the Effecitve Dissemination and Use of Learning Objectives Catalogs for Health Information Curricula Development. Studies in Health Technology and Informatics. DOI: 10.3233/shti230168
  To the publication
• Borchert F, Llorca I, Schapranow MP. 2023. vol. 14163. Cross-Lingual Candidate Retrieval and Reranking for Biomedical Entity Linking. Experimental IR Meets Multilinguality, Multimodality, and Interaction. CLEF 2023. Lecture Notes in Computer Science. DOI: 10.1007/978-3-031-42448-9_12
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• Borchert F, Llorca I, Schapranow MP. 2023. HPI-DHC @ BC8 SympTEMIST Track: Detection and Normalization of Symptom Mentions with SpanMarker and xMEN. Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the Era of Generative Models.
• Draeger C, Löbe M, Meineke FA. 2023 . Data Quality Assessment in the seventh MII-Projectathon. GMDS 2023.
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• Draeger C, Stäubert S, Kuntz A, Henke C, Winter A, Sax U, Löbe M. 2023 309. Modeling the Application of IHE QRPH Profiles in Data Integratoin Centers: A Practical Approach with 3LGM2. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230755
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• Erdfelder F, Begerau H, Meyers D, Quast KJ, Schumacher D, Brieden T, Ihle R, Ammon D, Kruse HM, Zenker S, Enhancing Data Protection via Auditable Informational Separation of Powers Between Workflow Engine Based Agents: Conceptualization, Implementation, and First Cross-Institutional Experiences., Studies in Health Technology and Informatics. 2023; 302:317-321. DOI: 10.3233/SHTI230126.
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• Faessler E, Hahn U, Schäuble S. 2023. 51. GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions. Nucleic Acids Research.
  To the publication
• Festag S, Spreckelsen C, Medical multivariate time series imputation and forecasting based on a recurrent conditional Wasserstein GAN and attention. Journal of Biomedical Informatics. 2023; 139:104320. DOI: 10.1016/j.jbi.2023.104320.
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• Fonck S, Fritsch S, Nottenkämper G, Stollenwerk A. 2023. 2 (1):742. Implementation of ResNet-50 for the Detection of ARDS in Ches X-Rays using transfer-learning. Proceedings on automation in medical engineering. DOI: 10.18416/automed.2023
• Fonck S, Fritsch S, Stollenwerk A. 2023 . Software-Architektur für eine KI-Unterstützung bei der ARDS Behandlung. SMITH Science Day 2022. DOI: 10.3205/22smith17
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• Fox S, Preiß M, Borchert F, Rasheed A, Schapranow MP. 2023. pp. 185-192. HPIDHC at NTCIR-17 MedNLP-SC: Data Augmentation and Ensemble Learning for Multilingual Adverse Drug Event Detection. NTCIR 17 Conference: Proceedings of the 17th NTCIR Conference on Evaluation of Information Access Technologies. DOI: 10.20736/0002001295
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• Heming, Michael et al. “Supporting the differential diagnosis of connective tissue diseases with neurological involvement by blood and cerebrospinal fluid flow cytometry.” Journal of neuroinflammation vol. 20,1 46. 23 Feb. 2023, doi:10.1186/s12974-023-02733-w
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• Henke E, Zoch M, Reinecke I, Spoden M, Ruhnke T, Günster C, Sedlmayr M, Bathelt F (2023): "German Claims Data for Real-World Research: Content Coverage Evaluation in OMOP CDM". Stud Health Technol Inform. 2023 May 18;302:3-7. doi: 10.3233/SHTI230053. PMID: 37203598.
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• Henke V, Hülsken G, Schneider H, Varghese J. 2023. Health Data Management im Krankenhaus - Compliance-konformer Umgang mit Gesundheitsdaten als erfolgreicher Schlüsselfaktor. Springer Gabler.
• Intemann T, Kaulke K, Kipker D-K, Lettieri V, Stallmann C, Schmidt CO, Geidel L, Bialke M, Hampf C, Stahl D, Lablans M, Franke M, Kraywinkel KP, Kieschke J, Bartholomäus S, Näher A-F, Tremper G, Lambarki M, March S, Prasser F, Haber AC, Drepper J, Schlünder I, Kirsten T, Pigeot I, Sax U, Buchner B, Ahrens W, Semler SC: White Paper - Verbesserung des Record Linkage für die Gesundheitsforschung in Deutschland (DOI: 10.4126/FRL01-006461895)
  To the publication
• Kolditz T, Lohr C, Moderohn L, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 2: Annotation von personenidentifizierenden (PHI-)Attributen. Zenodo. 2023. DOI: 10.5281/zenodo.7707882.
• Kreuzthaler M, Brochhausen M, Zayas C, Blobel B, Schulz S. 2023 101073313. Linguistic and ontological challenges of multiple domains contributing to transformed health ecosystems. Frontiers in Medicine. DOI: 10.3389/fmed.2023.1073313
  To the publication
• Kämmer N, Borchert F, Winkler S, de Melo G, Schapranow MP. 2023. pp. 292-305. Resolving Elliptical Compounds in German Medical Text. The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks. DOI: 10.18653/v1/2023.bionlp-1.26
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• Llorca I, Borchert F, Schapranow MP. 2023. pp. 171-181. A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. Proceedings of the 5th Clinical Natural Language Processing Workshop. DOI: 10.18653/v1/2023.clinicalnlp-1.23
  To the publication
• Lohr C, Hahn U. 2023. pp. 218-228. DoPA Meter - A Tool Suite for Metrical Document Profiling and Aggregation. EMNLP Demo 2023 - Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing: System Demonstrations.
• Lohr C, Kolditz T, Modersohn L, Hellrich J, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 3: Annotation von Basis-Entitäten: Diagnosen, Befunde und Symptome. Zenodo. 2023. DOI: 10.5281/zenodo.7707916.
• Lohr C, Luther S, Ammon D, Saleh K, Modersohn L, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 1: Annotation von inhaltlich kohärenten Textabschnitten (Sektionen). Zenodo. 2023. DOI: 10.5281/zenodo.7707756.
• Lowitsch V, Remmler A, Richter F, Sezer M. 2023. ASIC-App (Algorithmic Surveillance of ICU Patients). SMITH Science Day 2022. DOI: 10.3205/22smith14
• Mang JM, Prokosch HU, Kapsner L. "Reproducibility in 2023 – An End-to-End Template for Analysis and Manuscript Writing" Stud Health Technol Inform 2023; 18;302:58-62. DOI: 10.3233/SHTI230064.
  To the publication
• Marx G, Schuppert A, Scherag A, Kao J, Bleilevens A, Lowitsch V, Bickenbach J. 2023. Use Case ASIC - Daten und detaillierte Analyse. SMITH Science Day 2022. DOI: 10.3205/22smith02
• Matthies F, Beger C, Schäfermeier R, Uciteli A. 2023 307. Concept Graphs: A Novel Approach for Textual Analysis of Medical Documents. German Medical Data Sciences 2023. DOI: 10.3233/SHTI230710
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• Matthies F, Lohr C, Modersohn L, Hahn U., Annotationsleitlinien für deutschsprachige Medizintexte. Teil 4: Annotation von Medikationsangaben. Zenodo. 2023. DOI: 10.5281/zenodo.7707946.
• Matthies F, Neumann D. 2023. Struktursuche in pharmazeutischen Fachinformationen zur maschinenlesbaren Abbildung von AMTS-relevanten Informationen. SMITH Science Day 2022. DOI: 10.3205/22smith26
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• Meineke FA, Modersohn L, Löffler M, Böker M. 2023 302835-836. Announcement of the German Medical Text Corpus Project. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230283
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• Metzger P, Hess ME, Blaumeiser A, Pauli T, Schipperges V, Mertes R, Christoph J, Unberath P, Reimer N, Scheible R, Illert AL, Busch H, Andrieux G, Boerries M. "MIRACUM-Pipe: An Adaptable Pipeline for Next-Generation Sequencing Analysis, Reporting, and Visualization for Clinical Decision Making." Cancers 2023; 15:3456. DOI: 10.3390/cancers15133456.
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• Molinnus D, Kurth A, Lowitsch V, Marx G, Bickenbach J. 2023 302366-367. Towards an Advanced Digital Infrastructure Within the Non-University Sector Demonstrated by the PICOS App. Studies in Health Technology and Informatics. DOI: 10.3233/SHTI230143
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• Nelde A, Schuster H, Heitmann JS, Bauer J, Maringer Y, Zwick M, Volkmer J-P, Chen JY, Paczulla Stanger AM, Lehmann A, Appiah B, Märklin M, Rücker-Braun E, Salih HR, Roerden M, Schroeder SM, Häring M-F, Schlosser A, Schetelig J, Schmitz M, Boerries M, Köhler N, Lengerke C, Majeti R, Weissman IL, Rammensee H-G and Walz JS
  Immune Surveillance of Acute Myeloid Leukemia Is Mediated by HLA-Presented Antigens on Leukemia Progenitor Cells. Blood Cancer Discov (2023) 4 (6) 468–489. doi: 10.1158/2643-3230.BCD-23-0020
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• Neumann D, Böhmer A. 2023. Patient Journey Modeling zur menschen- und maschinenlesbaren Operationalisierung unerwünschter arzneimittelbezogener Ereignisse am Beispiel des unerwünschten Ereignisses gastrointestinale Blutung. SMITH Science Day 2022. DOI: 10.3205/22smith25
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• Neumann D, Thalheim T, Kesselmeier M, Andrikyan W, Farker K, Weisbah L, Schuster AK, Karsten Dafonte K, Böhmer A, Then MI, Maas R, Fromm MF, Scherag A, Löffler M. 2023. POLAR Plausibilisierungskampagne – technischer Test. SMITH Science Day 2022. DOI: 10.3205/22smith31
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• Palm J, Meineke F, Przybilla J, Peschel T. 2023 1454-64. fhircrackr: An R package unlocking Fast Healthcare Interoperability Resources (FHIR) for statistical analysis. Applied Clinical Informatics. DOI: 10.1055/s-0042-1760436
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• Peng Y, Henke E, Reinecke I, Zoch M, Sedlmayr M, Bathelt F. "An ETL-process design for data harmonization to participate in international research with German real-world data based on FHIR and OMOP CDM." Int J Med Inform 2023; 169:104925. DOI: 10.1016/j.ijmedinf.2022.104925.
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• Prokosch H.U., Gebhardt M., Gruendner J., Kleinert P., Buckow K., Rosenau R., Semler S.C (2023).  Towards a National Portal for Medical Research Data (FDPG): Vision, Status, and Lessons Learned. Stud Health Technol Inform. 2023; 18;302:307-311. doi: 10.3233/SHTI230124.  PMID: 37203668.
• Prokosch H.U., Gruendner J., Gebhardt M., Buckow K., Kleinert P., Semler S.C. (2023). Das Forschungsdatenportal für Gesundheit: Zugang zu Real World Routinedaten der deutschen Universitätskliniken. gesundhyte.de Dec 2023. 15: 15-19.
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• Polzin R, Sharafutdinov K, Mayer H, Barakat C, Marx G, Bickenbach J, Schuppert A. 2023. DEA Diagnostic Expert Advisor. SMITH Science Day 2022. DOI: 10.3205/22smith16
• Puladi B, Ooms M, Rieg A, Taubert M, Rashad A, Hölzle F, Röhrig R, Modabber A. Development of machine learning and multivariable models for predicting blood transfusion in head and neck microvascular reconstruction for risk-stratified patient blood management. Head Neck. 2023 Apr 18. DOI: 10.1002/hed.27353. Epub ahead of print. PMID: 37070282.
  To the publication
• Renner C, Reimer N, Christoph J, Busch H, Metzger P, Boerries M, Ustjanzew A, Boehm D, Unberath P.
  Extending cBioPortal for Therapy Recommendation Documentation in Molecular Tumor Boards: Development and Usability Study. DOI: 10.2196/50017. PMID: 38079196; PMCID: PMC10750236.
  To the publication 
• Riedel M, Barakat C, Fritsch S, Aach M, Busch J, Lintermann A, Schuppert A, Brynjólfsson S, Neukirchen H, Book M. 2023. Enabling Hyperparameter-Tuning of AI Models for Healthcare using the CoE RAISE Unique AI Framework for HPC. 46th MIPRO ICT and Electronics Convention. DOI: 10.23919/MIPRO57284.2023.10159755
• Rohde F, Franke M, Christen V, Rahm E., Value-specific Weighting for Record-level Encodings in Privacy-Preserving Record Linkage., In: König-Ries B, Scherzinger S, Lehner W & Vossen G (Hrsg.), BTW 2023, Gesellschaft für Informatik e. V.; 439. DOI: 10.18420/BTW2023-21.
• Scheible R, Thomczyk F, Blum M, Rautenberg M, Prunotto A, Yazijy S, Boeker M. "Integrating row level security in i2b2: segregation of medical records into data marts without data replication and synchronization." JAMIA Open 2023; 6:ooad068. DOI: 10.1093/jamiaopen/ooad068.
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• Sehring J, Dohmen H, Selignow C, Schmid K, Grau S, Stein M, Uhl E, Mukhopadhyay A, Németh A, Amsel D, Acker T.Leveraging Attention-Based Convolutional Neural Networks for Meningioma Classification in Computational Histopathology. Cancers 2023; 15:5190. DOI: 10.3390/cancers15215190.
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• Schmid K, Sehring J, Németh A, Harter PN, Weber KJ, Vengadeswaran A, Storf H, Seidemann C, Karki K, Fischer P, Dohmen H, Selignow C, von Deimling A, Grau S, Schröder U, Plate KH, Stein M, Uhl E, Acker T, Amsel D.
  DistSNE: Distributed computing and online visualization of DNA methylation-based central nervous system tumor classification. Brain Patho 2023; e13228. DOI: 10.1111/bpa.13228. Epub ahead of print.
  To the publication 
• Schumann A, Gaser C, Sabeghi R, Schulze PC, Festag S, Spreckelsen C, Bär KJ. Using machine learning to estimate the calendar age based on autonomic cardiovascular function. Front Aging Neurosci. 2023 Jan 23;14:899249. DOI: 10.3389/fnagi.2022.899249.
• Sharafutdinov K, Fritsch SJ, Polzin R, Mayer H, Barakat C, Marx G, Bickenbach J, Schuppert A. 2023. ICU Virtual Patient Modeling Framework. SMITH Science Day 2022. DOI: 10.3205/22smith15
• Schüttler C, Zerlik M, Gruendner J, Köhler T, Rosenau L, Prokosch H, Sedlmayr B: "Empowering Researchers to Query Medical Data and Biospecimens by Ensuring Appropriate Usability of a Feasibility Tool: Evaluation Study". JMIR Hum Factors 2023;10:e43782. doi: 10.2196/43782 PMID: 37074765
  To the publication
• Siziba LP, Baier C, Pütz E, Ascherl R, Wendt T, Thome UH, Gebauer C, Genuneit J. 2023 10. A descriptive analysis of human milk dispensed by the Leipzig Donor Human Milk Bank for neonates between 2012 and 2019. Frontiers in Nutrition. DOI: 10.3389/fnut.2023.1233109
• Thalheim T, Neumann D, Kesselmeier M, Peschel T, Palm J, Meineke F, Schmidt F, Böhmer A, Scherag A, Löffler M. 2023. Die POLAR ETL – ein wegweisender Hürdenlauf vom Idealkonzept zur realen Auswertung. SMITH Science Day 2022. DOI: 10.3205/22smith32
  To the publication
• Thürmann L, Klös M, Mackowiak SD, Bieg M, Bauer T, Ishaque N, Messingschlager M,... Faessler E, Hahn U, … Herberth G, Kabesch M, Eils R, Trump S, Lehmann I. 2023. 78:1489-1506. Global hypomethylation in childhood asthma identified by genome-wide DNA-methylation swquencing preferentially affects enhancer regions. Allergy.
• Velasco Cárdenas, R.MH., Brandl, S.M., Meléndez, A.V. et al. Harnessing CD3 diversity to optimize CAR T cells. Nat Immunol 24, 2135–2149 (2023). doi: 10.1038/s41590-023-01658-z
  To the publication
• Welle F, Stoll K, Gillmann C, Henkelmann J, Prasse G, Kaiser DPO, Kellner E, Reisert M, Schneider HR, Klingbeil J, Stockert A, Lobsien D, Hoffmann KT, Saur D, Wawrzyniak M. Tissue Outcome Prediction in Patients with Proximal Vessel Occlusion and Mechanical Thrombectomy Using Logistic Models. Translational Stroke Research. 2023. DOI: 10.1007/s12975-023-01160-6
• Wolfien M, Ahmadi N, Fitzer K, Grummt S, Heine KL, Jung IC,  Krefting DK, Kühn A, Peng Y, Reinecke I, Scheel J, Schmidt T, Schmücker P, Schüttler C, Waltemath D, Zoch M, Sedlmayr M. Ten Topics to Get Started in Medical Informatics Research. J Med Internet Res 2023; 25:e45948. DOI: 10.2196/45948.
  To the publication 

2022:

• Ahmadi N, Peng Y, Wolfien M, Zoch M, Sedlmayr M.
  OMOP CDM Can Facilitate Data-Driven Studies for Cancer Prediction: A Systematic Review.
  Int. J. Mol. Sci 2022; 23:11834. DOI: 10.3390/ijms231911834.
  To the publication 
• Ahrens PC, Steinbach D, Schmidt, M et al., “Applying Machine Learning to Blood Count Data Predicts Sepsis with ICU Admission.” medRxiv 2022.10.21.22281348; doi:10.1101/2022.10.21.22281348 
  To the publication
• Andrikyan W, Jung-Poppe L, Altenbuchner A, et al. Documentation of Drug-Related Problems 
  with ICD-11: Application of the New WHO Code-Set to Clinical Routine Data. J Clin Med. 
  2022;12(1):315. Published 2022 Dec 31. doi:10.3390/jcm12010315 
• Andrikyan W, Then MI, Gaßmann KG, et al. Use of medication data alone to identify 
  diagnoses and related contraindications: Application of algorithms to close a common 
  documentation gap. Br J Clin Pharmacol. 2022;88(12):5399-5411. doi:10.1111/bcp.15469 
• Arnold N, Ascherl RG, Thome UH., Charts and LMS Tables of Transfontanellar and Transvertical Ear-to-Ear Distances for Gestational Age, Front Pediatr. 2022; 10:838333. DOI: 10.3389/fped.2022.838333 
  To the publication 
• Bathelt F, Reinecke I, Peng Y, Henke E, Weidner J, Bartos M, Gött R, Waltemath D, Engelmann K, Schwarz PEH, Sedlmayr M. "Opportunities of Digital Infrastructures for Disease Management—Exemplified on COVID-19-Related Change in Diagnosis Counts for Diabetes-Related Eye Diseases" Nutrients 2022; 14,2016. DOI: 10.3390/nu14102016.
  To the publication
• Barakat C, Fritsch S, Sharafutdinov K, Ingólfsson G, Schuppert A, Brynjólfsson S, Riedel M. 2021. p. 368-373. Lessons learned on using High-Performance Computing and Data Science Methods towards understanding the Acute Respiratory Distress Syndrome (ARDS). 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO).
• Beger C, Matthies F, Schäfermeier R, Kirsten T, Herre H, Uciteli A., Towards an Ontology-Based Phenotypic Query Model., Appl. Sci. 2022; 12(10): 5210; DOI: 10.3390/app12105214.
• Beck J, Blasini R, Michel-Backofen A, Schneider H. 2022. Transforming medication data from the Meona HIS into FHIR resources. GMDS/TMF Jahrestagung 2022. DOI: 10.3205/22gmds115
  To the publication
• Bialke M, Geidel L, Hampf C, Blumentritt A, Penndorf P, Schuldt R, Moser F, Lang S, Werner P, Stäubert S, Hund H, Albashiti F, Gührer J, Prokosch H, Bahls T, Hoffmann W. "A FHIR has been lit on gICS: facilitating the standardised exchange of informed consent in a large network of university medicine." BMC Med Inform Decis Mak 2022; 22:335. DOI: 10.1186/s12911-022-02081-4.
  To the publication 
• Boeker M, Konhäuser Ph, Krefting D, Winter A: Die digitalen Kompetenzen für die Transformation des Gesundheitswesens. Ansätze und Lösungen der Medizininformatik Initiative (MII). Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 1_2022 (24), p.26-30.
• Borchert F, Lohr C, Modersohn L, Witt J, Langer T, Follmann M, Gietzelt M, Arnrich B, Hahn U, Schapranow MP. GGPONC 2.0 – The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers, LREC 2022, 2022, p. 3650-3660, http://www.lrec-conf.org/proceedings/lrec2022/pdf/2022.lrec-1.389.pdf
  To the publication
• Bott O, Spreckelsen C, Themenheft “Künstliche Intelligenz in der Medizin“ – Editorial. Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 2022
• De Arruda Botelho, M., Graf, M., Placzek, P., König, F., Bötte, F., Stickel, T., Hieber, D.A., 
  Zimmermann, L., Slupina, M., Mohr, C., Biergans, S., Akgün, M., Pfeifer, N., & Kohlbacher, 
  O. (2022). Bringing the Algorithms to the Data - Secure Distributed Medical Analytics using 
  the Personal Health Train (PHT-meDIC). ArXiv, abs/2212.03481.
• Faller J, Modersohn L, Hahn U. 2022. Annotationsleitlinien für deutschsprachige Medizintexte. Teil 7: Annotation von Sicherheitsaussagen (Faktualität). SMITH Technischer Report 7.
• Festag S, Denzler J, Spreckelsen C, Generative adversarial networks for biomedical time series forecasting and imputation, Journal of Biomedical Informatics, 2022, 129, DOI: 10.1016/j.jbi.2022.104058
  To the publication
• Festag S, Stein G, Büchner T, Shadaydeh M, Denzler J, Spreckelsen C, Outcome Prediction and Murmur Detection in Sets of Phonocardiograms by a Deep Learning-Based Ensemble Approach, Konferenzbeitrag “Computing in Cardiology 2022
  To the publication
• Fitzer K, Häuslschmid R, Blasini R, Altun FB, Hampf C, Freiesleben S, Macho P, Prokosch H, Gulden C. "Patient Recruitment System for Clinical Trials: A Mixed-Methods Study about Requirements at 10 University Hospitals" JMIR Med Inf 2022. 10:e28696. DOI: 10.2196/28696.
  To the publication 
• Frey P, Devisme A, Rose K, Schrempp M, Freihen V, Andrieux G, Boerries M, Hecht A.
  SMAD4 mutations do not preclude epithelial-mesenchymal transition in colorectal cancer
  Oncogene 2022; 41:824-837. DOI: 10.1038/s41388-021-02128-2.
  To the publication 
• Fritsch SJ, Blankenheim A, Wahl A, Hetfeld P, Maassen O, Deffge S, Kunze J, Rossaint R, Riedel M, Marx G, Bickenbach J, Attitudes and perception of artificial intelligence in healthcare: A cross-sectional survey among patients, Digital Health, 2022, 8, 1-16, DOI: 10.1177/20552076221116772
  To the publication
• Fortmann J, Lutz M, Spreckelsen C, System for Context-Specific Visualization of Clinical Practice Guidelines (GuLiNav): Concept and Software Implementation, JMIR Form Res. 2022; 6(6): e28013, DOI: 10.2196/28013
  To the publication
• Haerdtlein A, Boehmer AM, Karsten Dafonte K, Rottenkolber M, Jaehde U, Dreischulte T. 
  Prioritisation of Adverse Drug Events Leading to Hospital Admission and Occurring during 
  Hospitalisation: A RAND Survey. J Clin Med. 2022;11(15):4254. Published 2022 Jul 22. doi:10.3390/jcm11154254 
• Härzschel A, Li L, Krenn PW, Szenes-Nagy E, Andrieux G, Bayer E, Pfeifer D, Polcik L, Denk U, Höpner JP, Karabatak E, Danner DJ, Tangermann S, Kenner L, Jumaa H, Greil R, Börries M, Ruppert R, Maity PC, Hartmann TN. Kindlin-3 maintains marginal zone B cells but confines follicular B cell activation and differentiation
  J Leukoc Biol 2022; 111:745-758. DOI: 10.1002/JLB.1HI0621-313R.
  To the publication 
• Klötgen M, Lauf F, Stäubert S, Meister S, Ammon D, A Trusted Data Sharing Environment based on FAIR Principles and Distributed Process Execution.  In Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies – 2022, Volume 5: HEALTHINF, ISBN 978-989-758-552-4, ISSN 2184-4305, pages 583-589. DOI: 10.5220/0010869800003123
  To the publication
• Konsortium Smart Medical Information Technology for Healthcare (SMITH; Herausgeber), Science Day 2022: Abstractbook | 23.11.2022, Abstracts der Poster und Kurzvorträge, 2022; smith.care/wp-content/uploads/2022/11/RZ_SMITH-science-day_abstracts_book_
• Lang S, Bialke M, Geidel L, Stäubert S, Ammon D, Idris T, Merzweiler A, Römhild J, Neuer nationaler Standard für Patienteneinwilligungen auf Basis von HL7 FHIR. E-HEALTH-COM: Magazin für Health-IT, vernetzte Medizintechnik und Telemedizin 17, 2022;
  To the publication
• Langenbruch, Lisa et al. “Bilaterality of temporal EEG findings in limbic encephalitis compared to other mesiotemporal epilepsies - A retrospective cohort study.” Seizure vol. 96 (2022): 98-101. doi:10.1016/j.seizure.2022.02.005
  To the publication
• Löbe M, Kamdje-Wabo G, Sinza AC, Spengler H, Strobel M, Tute E., Towards Harmonized Data Quality in the Medical Informatics Initiative – Current State and Future Directions., Stud Health Technol Inform. 2022; 289:240-243. DOI: 10.3233/SHTI210904.
  To the publication
• Mang JM, Seuchter S, Gulden C, Schild S, Kraska D, Prokosch HU, Kapsner LA. "DQAgui: a graphical user interface for the MIRACUM data quality assessment tool." BMC Med Inform Decis Mak 2022; 22:213. DOI: 10.1186/s12911-022-01961-z.
  To the publication 
• Mariño J, Kasbohm E, Struckmann S, Kapsner LA, Schmidt CO. "R Packages for Data Quality Assessments and Data Monitoring: A Software Scoping Review with Recommendations for Future Developments" Applied Scieneces 2022; 26. DOI: 10.3390/app12094238.
  To the publication 
• Medenwald D, Brunner T, Christiansen H, Kisser U, Mansoorian S, Vordermark D, Prokosch HU, Seuchter SA, Kapsner LA on behalf of our MII research group. "Shift of radiotherapy use during the first wave of the COVID-19 pandemic? An analysis of German inpatient data" Strahlenther Onkol 2022. DOI: 10.1007/s00066-021-01883-1.
  To the publication 
• Modersohn L, Lohr C, Hahn U. 2022. Annotationsleitlinien für deutschsprachige Medizintexte. Teil 5: Annotation von weiteren medizinischen Entitäten und grundlegenden semantischen Relationen zwischen Entitäten. SMITH Technischer Report 5.
• Modersohn L, Hahn U. 2022. Annotatinsleitlinien für deutschsprachige Medizintexte. Teil 6: Annotation von zeitlichen Entitäten und Relationen. SMITH Technischer Report 6.
• Modersohn L, Schulz S, Lohr C, Hahn U, GRASCCO — The First Publicly Shareable, Multiply-Alienated German Clinical Text Corpus, SHTI 2022, 296; 66-72, DOI: 10.3233/SHTI220805
  To the publication
• Mueller, Linda et al. “Secondary Prevention in Lower Extremity Artery Disease Patients: Lipid-Lowering Therapy and Long-Term Guideline Adherence.” Journal of clinical medicine vol. 11,22 6838. 19 Nov. 2022, doi:10.3390/jcm11226838
  To the publication
• Mussawy B, Redeker L, Härterich S, Tröger F, Lüneburg N, Thürmann P, Schmiedl S. 2022. Analyse der Operationalisierbarkeit von vier PIM-Listen in elektronischen Krankenhausroutinedaten aus 13 Universitätskliniken. ADKA-Jahreskongress 2022, Nürnberg.
• Nies AT, König J, Hofmann U, Kölz C, Fromm MF, Schwab M. Interaction of Remdesivir with Clinically Relevant Hepatic Drug Uptake Transporters. Pharmaceutics. 2021;13(3):369. Published 2021 Mar 10. doi:10.3390/pharmaceutics13030369
• Palm J, Meineke FA, Przybilla J, Peschel T. "fhircrackr": An R Package Unlocking Fast Healthcare Interoperability Resources for Statistical Analysis. Appl Clin Inform. 2023;14(1):54-64. doi:10.1055/s-0042-1760436
• Prokosch H.U., Baber R., Bollmann P., Gebhardt M., Gruendner J., Hummel M. Aligning Biobanks and Data Integration Centers Efficiently (ABIDE_MI). Stud Health Technol Inform. May 2022 16;292:37-42. doi: 10.3233/SHTI220317. PMID: 35575846.
• Redeker L, Mussawy B, Härterich S, Tröger F, Lüneburg N, Thürmann P, Schmiedl S. 2022. Developing of algorithms and assessment of potential implementation of four PIM lists within the POLAR study. 7th German Pharm-Tox Summit.
• Reinecke I, Kallfelz M, Sedlmayr M, Siebel J, Bathelt F. Evaluation and Challenges of Medical Procedure Data Harmonization to SNOMED-CT for Observational Research. Stud Health Technol Inform 2022; 294:405-406. DOI: 10.3233/SHTI220484.
  To the publication 
• Riederer I, Mühlau M, Wiestler B et al (2022): „Structured Reporting in Multiple Sclerosis – Consensus-Based Reporting Templates for Magnetic Resonance Imaging of the Brain and Spinal Cord.“ Fortschr Röntgenstr 2022; DOI: 10.1055/a-1867-3942
  To the publication
• Roschka S, Leddig T, Bullerjahn M, Richter G, Liedtke W, Langanke M, Hoffmann W (2022): "Secondary use of health care data and left‑over biosamples within the ‘Medical Informatics Initiative’ (MII): a quasi‑randomized controlled evaluation of patient perceptions and preferences regarding the consent process." BMC Medical Informatics and Decision Making. 184: p. 1-9. DOI: 10.1186/s12911-022-01922-6.
  To the publication
• Scheer J, Volkert A, Brich N, Weinert L, Santhanam N, Krone M, Ganslandt T, Boeker M, Nagel T. "Visualization Techniques of Time-Oriented Data for the Comparison of Single Patients With Multiple Patients or Cohorts: Scoping Review." J Med Internet Res 2022; 24:e38041. DOI: 10.2196/38041.
  To the publication 
• Scheible R, Caliskan D, Fischer P, Thomczyk F, Zabka S, Schneider H, Boeker M, Schulz S, Prokosch HU, Gulden C. AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources – A Technical Case Report. Stud Health Technol Inform 2022; 290:32-36. DOI: 10.3233/SHTI220026. PMID: 35672965.
  To the publication 
• Scheible R, Strecker P, Yazijy S, Talpa R, Puhl A, Boeker M. A Multilingual Browser Platform for Medical Subject Headings Stud Health Technol Inform 2022; 289:384-387. DOI: 10.3233/SHTI210939.
  To the publication 
• Schemmann U, Schneider B, Phan-Vogtmann LA, Schäfer D, Scherag A, Spreckelsen C, Winter A: Lernziel- und Kompetenzkataloge für die Aus-, Fort- und Weiterbildung in der Medizinischen Informatik und verwandten Fächern: Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 1_2022 (24), p. 31-35.
• Schepers J, Fleck J, Schaaf J: „Die Medizininformatikinitiative und seltene Erkrankungen: Routinedaten der nächsten Generation für Diagnose, Therapie und Forschung“, Bundesgesundheitsblatt  2022 · 65:1151–1158 .doi: 10.1007/s00103022-03606-y 
  To the publication
• Scherer C, Endres S, Orban M, Kääb S, Massberg S, Winter A, Löbe M, Implementation of a Clinical Trial Recruitment Support System Based on Fast Healthcare Interoperability Resources (FHIR) in a Cardiology Department, Stud Health Technol Inform, 2022;  294:440-444. DOI: 10.3233/SHTI220497
  To the publication
• Scherag, A., Andrikyan, W., Dreischulte, T. et al. POLAR – „POLypharmazie, Arzneimittelwechselwirkungen und Risiken“ – wie können Daten aus der stationären Krankenversorgung zur Beurteilung beitragen?. Präv Gesundheitsf (2022)
  To the publication
• Schilling M, Rickmann L, Hutschenreuter G, Spreckelsen C, Reduction of Platelet Outdating and Shortage by Forecasting Demand With Statistical Learning and Deep Neural Networks: Modeling Study., JMIR Medical Informatics, 2022; DOI: 10.2196/29978
  To the publication
• Schoenthaler M, Fichtner UA;  Boeker M; Zoeller D, Binder B, Prokosch HU, Praus P, Walther T, Glienke M, Horki P. Gratzke C; Farin-Glattacker E.
  A nationwide registry for recurrent urolithiasis in the upper urinary tract – The RECUR study protocol.
  BMC Health Serv Res 2022; 22:1060. DOI: 10.1186/s12913-022-08375-7. 
  To the publication
• Schulz S, Boeker M, Prunotto A. "Validation of Multiple Path Translation for SNOMED CT Localisation." Stud Health Technol Inform 2022; 294:961-962. DOI: 10.3233/SHTI220641.
  To the publication
• Schüttler C, Jahns R, Prokosch HU, Wach S, Wullich B. "Biobanken, translationale Forschung und Medizininformatik." Urologie 2022; DOI: 10.1007/s00120-022-01850-3.
  To the publication
• Sharafutdinov K, Bhat JS, Fritsch SJ, Nikulina K, Samadi ME, Polzin R, Mayer H, Marx G, Bickenbach J, Schuppert A., Application of convex hull analysis for the evaluation of data heterogeneity between patient populations of different origin and implications of hospital bias in downstream machine-learning-based data processing: A comparison of 4 critical-care patient datasets., Frontiers in Big Data, 2022, 5:603429; DOI: 10.3389/fdata.2022.603429.
  To the publiation
• Spreckelsen C, Boeker M, Schuppert A, Varghese J, Semler S, Künstliche Intelligenz in der Medizininformatik-Initiative. Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), 2022
• Spohr C, Poggio T, Andrieux G, Schönberger K, Cabezas-Wallscheid N, Boerries M, Halbach S, Illert AL, Brummer T. Gab2 deficiency prevents Flt3-ITD driven acute myeloid leukemia in vivo Leukemia 2022; 36:970-982. DOI: 10.1038/s41375-021-01490-0.
  To the publication 
• Strecker P, Boeker M, Buechner S, Scheible R. "Usability Evaluation of a Modern Multilingual MeSH Browser" Stud Health Technol Inform 2022; 295:37-40. DOI: 10.3233/SHTI220653.
  To the publication
• Then MI, Andrikyan W, Fromm MF, Maas R. 2022. Clarity and usability of absolute contraindications in the Summary of Product Characteristics / Prescribing Information in international comparison for Germany, UK and US. DPhG Annual Meeting 2022.
• Then MI, Andrikyan W, Fromm MF, Maas R. Comprehensibility of Contraindications in German, UK and US Summaries of Product Characteristics/Prescribing Information—A Comparative Qualitative and Quantitative Analysis. Journal of Clinical Medicine. 2022; 11(14):4167. doi: 10.3390/jcm11144167
  To the publication
• Then MI, Andrikyan W, Maas R, Fromm MF. 2022 88(1)226-236. The CredibleMeds® list: Usage of QT interval prolonging drugs in Germany and discordances with prescribing information. British Journal of Clinical Pharmacology. DOI: 10.1111/bcp.14951
  To the publication
• Then MI, Tümena T, Sledziewska A, Gaßmann KG, Maas R, Fromm MF. Development in Prescriptions of Contraindicated and Potentially Harmful QT Interval-Prolonging Drugs in a Large Geriatric Inpatient Cohort From 2011 to 2021. Clin Pharmacol Ther. 2023;113(2):435-445. doi:10.1002/cpt.2813
• Tobias Kussel, Torben Brenner, Galina Tremper, Josef Schepers, Martin Lablans and Kay Hamacher: Record Linkage based Patient Intersection Cardinality for Rare Disease Studies using Mainzelliste and Secure Multi-Party Computation. In: BMC Journal of Translational Medicine; DOI 10.1186/s12967-022-03671-6 
  To the publication 
• Unberath P, Mahlmeister L, Reimer N, Busch H, Boerries M, Christoph J. Searching of Clinical Trials Made Easier in cBioPortal Using Patients‘ Genetic and Clinical Profiles. Appl Clin Inform 2022; 13:363-369. DOI: 10.1055/s-0042-1743560.
  To the publication 
• Vass A, Reinecke I, Boeker M, Prokosch HU, Gulden C. Availability of Structured Data Elements in Electronic Health Records for Supporting Patient Recruitment in Clinical Trials. Stud Health Technol Inform 2022; 290:130-134. DOI: 10.3233/SHTI220046. PMID: 35672985.
  To the publication
• Wahram A, Then MI, Gaßmann KG, Tümena T, Dürr P, Fromm MF, Maas R. 2022. Identification of diagnosis-related contraindications based on the medication plan alone. Naunyn-Schmiedeberg’s Archives of Pharmacology / German Pharm-Tox Summit 2022. DOI: 10.1007/s00210-022-02205-7
• Weisbach L, Schuster AK, Hartmann M, Fromm MF, Maas R, Farker K. 2022. Information deficits in liver-related contraindications – Analysis of clarity and codability in SmPCs/PI of major drug markets. GAA Jahrestagung 2022. DOI: 10.3205/22gaa09
  To the publication
• Weisbach L, Schuster AK, Hartmann M, Fromm MF, Maas R, Farker K. Inconsistencies and Ambiguities in Liver-Disease-Related Contraindications—A Systematic Analysis of SmPCs/PI of Major Drug Markets. Journal of Clinical Medicine. 2022; 11(7):1933. doi: 10.3390/jcm11071933 
  To the publication 
• Weisbach L, Schuster AK, Hartmann M, et al. Inconsistencies of absolute drug-drug contraindication reports: Analysis of Summaries of Product Characteristics of commonly prescribed drugs [published online ahead of print, 2023 Apr 1]. Br J Clin Pharmacol. 2023;10.1111/bcp.15730. doi:10.1111/bcp.15730 
• Welten S, Mou Y, Neumann L, et al. A Privacy-Preserving Distributed Analytics Platform for Health Care Data. Methods Inf Med. 2022;61(S 01):e1-e11. doi:10.1055/s-0041-1740564 
• Welten S, Hempel L, Abedi M, Mou Y, Jaberansary M, Neumann L, Weber S, Tahar K, Ucer Yediel Y, Löbe M, Decker S, Beyan O, Kirsten T, Multi-Institutional Breast Cancer Detection Using a Secure On-Boarding Service for Distributed Analytics, Appl. Sci. 2022, 12(9), 4336; DOI: 10.3390/app12094336
  To the publication
• Wirth FN, Kussel T, Müller A, Hamacher K, Prasser F. EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation. BMC Bioinformatics. 2022 Dec 
  To the publication 
• Zenker S, Strech D, Ihrig K, Jahns R, Müller G, Schickhardt C, Schmidt G, Speer R, Winkler E, von Kielmansegg SG, Drepper J (2022): "Data protection-compliant broad consent for secondary use of health care data and human biosamples for (bio)medical research: Towards a new German national standard." Journal of Biomedical Informatics, 131 (2022), 104096.
  To the publication

2021:

• Andrikyan W, Then MI, Gaßmann KG, Tümena T, Dürr P, Fromm MF, Maas R. 2021. Identification of disease-related contraindications based on the medication plan alone – a proof of principal study. DPhG Annual Meeting 2021.
• Anywar M, Pazmino S, Cheng K Y, Petersen N, Qian H, Rottmann F, Richter T, Bronsch T, Bergh B, Schreiweis B: "Mapping HL7v2 ORU and BAR Messages to openEHR Archetypes." 66. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 12. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e. V. (TMF), 2021. doi: 10.3205/21gmds025.
  To the publication
• Barakat C, Fritsch S, Riedel M, Brynjólfsson S. 2021 p. 311-316. An HPC-Driven Data Science Platform to Speed-up Time Series Data Analysis of Patients with the Acute Respiratory Distress Syndrome. 44th International Convention on Information, Communication and Electronic Technology (MIPRO). DOI: 10.23919/MIPRO52101.2021.9596840
  To the publication
• Bauer C, Quante M, Breunis WB, Regina C, Schneider M, Andrieux G, Gorka O, Groß O, Boerries M, Kammerer B, Hettmer S. Lack of Electron Acceptors Contributes to Redox Stress and Growth Arrest in Asparagine-Starved Sarcoma Cells Cancers (Basel) 2021; 13:412. DOI: 10.3390/cancers13030412.
  To the publication 
• Baumgartl T, Petzold M, Wunderlich M, Hohn M, Archambault D, Lieser M, et al (2021): "In Search of Patient Zero: Visual Analytics of Pathogen Transmission Parthways in Hospitals." IEEE Transactions on Visualization and Computer Graphics (TVCG), 27 (2): p. 711-721, 2021.
  To the publication
• Böhmer A, Härdtlein A, Dreischulte T, Jaehde U. 2021. Prioritisation of adverse drug events during hospitalization: A two-stage RAND survey. DPhG Annual Meeting 2021.
• Böhmer A, Härdtlein A, Rottenkolber M, Pudritz YM, Dreischulte T, Jaehde U (geteilte Erstautorenschaft). 2021. Prioritisation of adverse drug events leading to hospital admission and occurring during hospitalisation: A RAND survey. GAA Jahrestagung 2021. DOI: 10.3205/21gaa02
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• Brix, Tobias J et al. “ODM Clinical Data Generator: Syntactically Correct Clinical Data Based on Metadata Definition.” Studies in health technology and informatics vol. 278 (2021): 35-40. doi:10.3233/SHTI210048
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• Bloos F, Scherag A, Ammon D, Mueller S, Palm J, Simon P, Jahn N, Loeffler M, Wendt T, Schuerholz T, Groeber P, Schuppert A, Algorithmic surveillance of ICU patients with acute respiratory distress syndrome (ASIC): protocol for a multicentre stepped-wedge cluster randomised quality improvement strategy, BMJ Open. 2021; 11(4): e045589. DOI: 10.1136/bmjopen-2020-045589
  To the publication
• Caliskan D, Zierk J, Kraska D, Schulz S, Daumke P, Prokosch HU, Kapsner LA: "First Steps to Evaluate an NLP Tool’s Medication Extraction Accuracy from Discharge Letters." Stud Health Technol Inform 2021; 278: p. 224-230. DOI: 10.3233/SHTI210073.
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• Corrales E, Levit-Zerdoun E, Metzger P, Kowar S, Ku M, Brummer T, Boerries M. "Dynamic transcriptome analysis reveals signatures of paradoxical effect of vemurafenib on human dermal fibroblasts" Cell Commun Signal 2021; 19:123. DOI: 10.1186/s12964-021-00801-3.
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• Devane J, Ott E, Olinger EG, Epting D, Decker E, Friedrich A, Bachmann N, Renschler G, Eisenberger T, Briem-Richter A, Grabhorn EF, Powell L, Wilson IJ, Rice SJ, Miles CG, Wood K; Genomics England Research Consortium; Trivedi P, Hirschfield G, Pietrobattista A, Wohler E, Mezina A, Sobreira N, Agolini E, Maggiore G, Dahmer-Heath M, Yilmaz A, Boerries M, Metzger P, Schell C, Grünewald I, Konrad M, König J, Schlevogt B, Sayer JA, Bergmann C.
  Progressive liver, kidney, and heart degeneration in children and adults affected by TULP3 mutations – PMC (nih.gov) Am J Hum Genet 2022; 109: 928–943. DOI: 10.1016/j.ajhg.2022.03.015.
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• Dugas, Martin et al. “Lack of antibodies against seasonal coronavirus OC43 nucleocapsid protein identifies patients at risk of critical COVID-19.” Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology vol. 139 (2021): 104847. doi:10.1016/j.jcv.2021.104847 
  To the publication 
• Dugas, Martin et al. “Less severe course of COVID-19 is associated with elevated levels of antibodies against seasonal human coronaviruses OC43 and HKU1 (HCoV OC43, HCoV HKU1).” International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases vol. 105 (2021): 304-306. doi:10.1016/j.ijid.2021.02.085
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• Fonck S, Fritsch S, Kowalewski S, Hensen R, Stollenwerk A, Algorithmic distinction of ARDS and Heart Failure in ICU data from medical embedded systems by using a computer mode,4th CESCIT 2021 Conference, 2021, DOI: https://doi.org/10.5281/zenodo.4889873
• Greulich, Leonard et al. “A Seamless Pseudonymization and Randomization Workflow for REDCap.” Studies in health technology and informatics vol. 281 (2021): 952-956. doi:10.3233/SHTI210319
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• Gruendner J, Gulden C, Kampf MO, Mate S, Prokosch HU, Zierck J: "A Framework for Criteria-Based Selection and Processing of Fast Healthcare Interoperability Resources (FHIR) Data for Statistical Analysis: Design and Implementation Study." JMIR Med Inform 2021: 9 (4) : e25645. DOI: 10.2196/25645.
  To the publication
• Gulden C, Blasini R, Nassirian A, Stein A, Altun F, Kirchner M, Prokosch HU, Boeker M (2021): "Prototypical Clinical Trial Registry Based on Fast Healthcare Interoperability Resources (FHIR): Design and Implementation Study." JMIR Med Inform 2021; 9:e20470. DOI: 10.2196/20470.
  To the publication
• Grünwald BT, Devisme A, Andrieux G, Vyas F, Aliar K, McCloskey CW, Macklin A, Jang GH, Denroche R, Romero JM, Bavi P, Bronsert P, Notta F, O’Kane G, Wilson J, Knox J, Tamblyn L, Udaskin M, Radulovich N, Fischer SE, Boerries M, Gallinger S, Kislinger T, Khokha R. Spatially confined sub-tumor microenvironments in pancreatic cancer Cell 2021; 184:5577-5592.e18. DOI: 10.1016/j.cell.2021.09.022.
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• Hampf C, Bialke M, Geidel L, Vass A, Bahls T, Blasini R, Blumentritt A, Boeker M, Bruns C, Jandrig B, Fünfgeld M, Heinrich P, Leddig T, Michel-Backofen A, Pirkl A, Rautenberg M, Simons F, Stahl D, Prokosch HU, Hoffmann W (2021): “A survey on the current status and future perspective of informed consent management in the MIRACUM consortium of the German Medical Informatics Initiative.” BMC Translational Medicine Communications, 2021; 6:7. DOI: 10.1186/s41231-021-00086-1.
  To the publication
• Härdtlein A, Böhmer A, Rottenkolber M, Pudritz YM, Gensichen J, Jaehde U, Dreischulte T. 2021. Arzneimitteltherapiesicherheit (AMTS) in der ambulanten Versorgung: Entwicklung von Indikatoren zur Detektion potenziell arzneimittelbedingter Krankenhauseinweisungen in Routinedaten 55. Kongress für Allgemeinmedizin und Familienmedizin (DEGAM). DOI: 10.3205/21degam206
• Haring E, Andrieux G, Uhl FM, Krausz M, Proietti M, Sauer B, Esser PR, Martin SF, Pfeifer D, Schmitt-Graeff A, Duyster J, Köhler N, Grimbacher B, Boerries M, Aumann K, Zeiser R, Apostolova P. "Therapeutic targeting of endoplasmic reticulum stress in acute graft-versus-host disease" Haematologica 2021;  DOI: 10.3324/haematol.2021.278387. Online ahead of print.
  To the publication 
• Haring E, Uhl FM, Andrieux G, Proietti M, Bulashevska A, Sauer B, Braun LM, de Vega Gomez E, Esser PR, Martin SF, Pfeifer D, Follo M, Schmitt-Graeff A, Buescher J, Duyster J, Grimbacher B, Boerries M, Pearce EL, Zeiser R, Apostolova P. Bile acids regulate intestinal antigen presentation and reduce graft-versus-host disease without impairing the graft-versus-leukemia effect. Haematologica 2021; 106:2131-2146. DOI: 10.3324/haematol.2019.242990.
  To the publication 
• Hoefflin R, Harlander S, Abhari BA, Peighambari A, Adlesic M, Seidel P, Zodel K, Haug S, Göcmen B, Li Y, Lahrmann B, Grabe N, Heide D, Boerries M, Köttgen A, Heikenwalder M, Frew IJ. Therapeutic Effects of Inhibition of Sphingosine-1-Phosphate Signaling in HIF-2α Inhibitor-Resistant Clear Cell Renal Cell Carcinoma. Cancers (Basel) 2021; 13:4801. DOI: 10.3390/cancers13194801.
  To the publication 
• Hoefflin R, Lazarou A, Hess ME, Reiser M, Wehrle J, Metzger P, Frey AV, Becker H, Aumann K, Berner K, Boeker M, Buettner N, Dierks C, Duque-Afonso J, Eisenblaetter M, Erbes T, Fritsch R, Ge IX, Geißler AL, Grabbert M, Heeg S, Heiland DH, Hettmer S, Kayser G, Keller A, Kleiber A, Kutilina A, Mehmed L, Meiss F, Poxleitner P, Rawluk J, Ruf J, Schäfer H, Scherer F, Shoumariyeh K, Tzschach A, Peters C, Brummer T, Werner M, Duyster J, Lassmann S, Miething C, Boerries M, Illert AL, von Bubnoff N. Transitioning the Molecular Tumor Board from Proof of Concept to Clinical Routine: A German Single-Center Analysis. Cancers (Basel) 2021; 13:1151. DOI: 10.3390/cancers13051151.
  To the publication 
• Hund H, Wettstein R, Heidt CM, Fegeler C (2021): "Executing Distributed Healthcare and Research Processes - The HiGHmed Data Sharing Framework." Studies in Health Technology and Informatics, 278: p. 126-133, 2021.
  To the publication
• Kapsner LA, Kampf MO, Seuchter SA, Gruendner J, Gulden C, Mate S, Mang JM, Schüttler C, Deppenwiese N, Krause L, Zöller D, Balig J, Fuchs T, Fischer P, Haverkamp C, Holderried M, Mayer G, Stenzhorn H, Stolnicu A, Storck M, Storf H, Zohner J, Kohlbacher O, Strzelczyk A, Schüttler J, Acker T, Boeker M, Kaisers UX, Kestler HA and Prokosch H-U (2021): "Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown." Front. Public Health 8:594117. DOI: 10.3389/fpubh.2020.594117
  To the publication
• Kapsner LA, Mang JM, Mate S, Seuchter SA, Vengadeswaran A, Bathelt F, Deppenwiese N, Kadioglu D, Kraska D, Prokosch HU: "Linking a Consortium-Wide Data Quality Assessment Tool with the MIRACUM Metadata Repository." Appl Clin Inform 2021; 12: p. 826-835. DOI: 10.1055/s-0041-1733847.
  To the publication
• Kapsner LA, Zavgorodnij MG, Majorova SP, Hotz‐Wagenblatt A, Kolychev OV, Lebedev IN, Hoheisel JD, Hartmann A, Bauer A, Mate S, Prokosch H, Haller F, and Moskalev EA: "BiasCorrector: fast and accurate correction of all types of experimental biases in quantitative DNA methylation data derived by different technologies." Int. J. Cancer 2021: p. 1150-1165. ijc.33681. DOI: 10.1002/ijc.33681.
  To the publication
• Kesselmeier M, Boeker M, Gantner J, Löffler M, Meineke F, Peschel T, Przybilla J, Scherag A, Schulze S, Schuster J, Zeynalova S, Zöller D. 2021. Biometrical challenges of the Use Case of the Medical Informatics Initiative (MI-I) on „POLypharmacy, drug inter Actions, Risks“ (POLAR_MI). Biometrisches Kolloquium 2021.
• Kinast, B, Lutz, M, Schreiweis, B: "Telemonitoring of Real-World Health Data in Cardiology: A Systematic Review." Int. J. Environ. Res. Public Health 2021, 18, 9070. doi: 10.3390/ijerph18179070
  To the publication
• Kind F, Fassbender TF, Andrieux G, Boerries M, Meyer PT, Ruf J. Early PSA Change after [177Lu]PSMA-617 Radioligand Therapy as a Predicator of Biochemical Response and Overall Survival. Cancers (Basel) 2021; 14:149. DOI: 10.3390/cancers14010149.
  To the publication 
• Kindermann A, Tute E, Benda S, et al (2021): "Preliminary Analysis of Structured Reporting in the HiGHmed Use Case Cardiology: Challenges and Measures." Studies in Health Technology and Informatics. 278: p. 187-194, 2021.
  To the publication
• Klann JG, Weber GM, Estiri H, Moal B, Avillach P, Hong C, Castro V, Maulhardt T, Tan ALM, Geva A, Beaulieu-Jones BK, Malovini A, South AM, Visweswaran S, Omenn GS, Ngiam KY, Mandl KD, Boeker M, Olson KL, Mowery DL, Morris M, Follett RW, Hanauer DA, Bellazzi R, Moore JH, Loh NW, Bell DS, Wagholikar KB, Chiovato L, Tibollo V, Rieg S, Li ALLJ, Jouhet V, Schriver E, Samayamuthu MJ, Xia Z, Hutch M, Luo Y, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE) (CONSORTIA AUTHOR), Kohane IS, Brat GA, Murphy SN (2021): "Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data", Journal of the American Medical Informatics Association, 2021, ocab018.  DOI: 10.1093/jamia/ocab018.
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• Kläsener K, Jellusova J, Andrieux G, Salzer U, Böhler C, Steiner SN, Albinus JB, Cavallari M, Süß B, Voll RE, Boerries M, Wollscheid B, Reth M. CD20 as a gatekeeper of the resting state of human B cells. Proc Natl Acad Sci U S A 2021; 118:e2021342118. DOI: 10.1073/pnas.2021342118.
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• Klötgen M, Fiege E, Houta S, Concept and Implementation of Data Usage Proposal Process Based on International Standards in SMITH, Stud Health Technol Inform 2021; 278:171-179. DOI: 10.3233/SHTI210066.
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• Kruse HM, Helhorn A, Phan-Vogtmann LA, Palm J, Thomas E, Iffland A, Heidel A, Müller S, Saleh K, Krohn K, Specht M, Hartmann M, Farker K, Spreckelsen C, Henkel A, Scherag A, Ammon D. Integration of allergy documentation into an interoperable archiving and communication platform to improve patient care and clinical research at the Jena University Hospital, GMS Med Inform Biom Epidemiol 2021; 17(2): DOI: 10.3205/mibe000220
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• Kock-Schoppenhauer AK, Schreiweis B, Ulrich H, Reimer N, Wiedekopf J, Kinast B, Busch H, Bergh B, Ingenerf J (2021). "Medical Data Engineering – Theory and Practice." In Bellatreche L., Chernishev G., Corral A., Ouchani S., Vain J. (eds) Advances in Model and Data Engineering in the Digitalizaton Era. MEDI 2021. Communications in Computer and Information Science, vol. 1481. Springer, Cham. p. 269-284. doi: 10.1007/978-3-030-87657-9_21
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• Langenbruch, Lisa et al. “Bilaterality of temporal EEG findings in limbic encephalitis compared to other mesiotemporal epilepsies - A retrospective cohort study.” Seizure vol. 96 (2022): 98-101. doi:10.1016/j.seizure.2022.02.005
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• Lehne M, Schaaf J, Storf H, Martin T, Graeßner H, Geihs S, Lutz I, Tahar K, Krefting D, Berner R, Hebestreit H, Schippers C, Thun S, Schepers J; Rare Diseases in German University Medicine – a Comparison with National Case Statistics; doi: 10.3205/21gmds118. 
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• Lenz S, Hackenberg M, Binder H; The JuliaConnectoR: a functionally oriented interface for integrating Julia in R; arXiv:2005.06334
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• Lenz S, Hess M, Binder H: "Deep generative models in DataSHIELD." BMC Med Res Methodol 2021: 21: 64. DOI: 10.1186/s12874-021-01237-6.
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• Lohr C, Eder E, Hahn U: Pseudonymization of PHI Items in German Clinical Reports. In: Studies in Health Technology and Informatics, Vol. 281: Public Health and Informatics – Proceedings of MIE 2021, PMID: 34042748, DOI:10.3233/SHTI210163
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• Maassen O, Fritsch S, Palm J, Deffge S, Kunze J, Marx G, Riedel M, Schuppert A, Bickenbach J (2021) Future Medical Artificial Intelligence Application Requirements and Expectations of Physicians in German University Hospitals: Web-Based Survey. J Med Internet Res. 2021;23(3): e26646. DOI: 10.2196/26646
  To the publication
• Maier C,  Kapsner LA, Mate S, Prokosch HU, Kraus S: "Patient Cohort Identification on Time Series Data Using the OMOP Common Data Model."Appl Clin Inform 2021; 12: p. 057-064. DOI: 10.1055/s-0040-1721481.
  To the publication
• Martin T, Tahar K, Lehne M, Hebestreit H, Schepers J, Krefting D, Graeßner H; Problems of finding rare diseases in the documentation of German hospitals; doi:10.3205/21gmds117.  
  To the publication
• Marx G, Bickenbach J, Fritsch SJ, Kunze JB, Maassen O, Deffge S, Kistermann J, Haferkamp S, Lutz I, Voellm NK Lowitsch V, Polzin R, Sharafutdinov K, Mayer H, Kuepfer L, Burghaus R, Schmitt W, Lippert J, Riedel M, Barakat C, Stollenwerk A, Fonck S, Putensen C, Zenker S, Erdfelder F, Grigutsch D, Kram R, Beyer S, Kampe K, Gewehr JK, Salman F, Juers P, Kluge S, Tiller D, Wisotzki E, Gross S, Homeister L, Bloos F, Scherag A, Ammon D, Mueller S, Palm J, Simon P, Jahn N, Loeffler M, Wendt T, Schuerholz T, Groeber P, Schuppert A,. 2021 11(4)e045589. Algorithmic surveillance of ICU patients with acute respiratory distress syndrome (ASIC): protocol for a multicentre stepped-wedge cluster randomised quality improvement strategy. BMJ Open. DOI: 10.1136/bmjopen-2020-045589
  To the publication
• Mate S, Seuchter SA, Ehrenberg K, Deppenwiese N, Zierk J, Prokosch HU, Kraska D, Kapsner LA: "A Multi-User Terminology Mapping Toolbox." Stud Health Technol Inform 2021: p. 278:217-223. DOI: 10.3233/SHTI210072.
  To the publication
• Melzer G, Maiwald T, Prokosch HU, Ganslandt T (2021): "Leveraging Real-World Data for the Selection of Relevant Eligibility Criteria for the Implementation of Electronic Recruitment Support in Clinical Trials."
  Appl Clin Inform 2021; 12:017-026. DOI: 10.1055/s-0040-1721010. 
  To the publication
• Nies AT, König J, Hofmann U, Kölz C, Fromm MF, Schwab M. 2021 13(3)369. Interaction of Remdesivir with Clinically Relevant Hepatic Drug Uptake Transporters. Pharmaceutics. DOI: 10.3390/pharmaceutics13030369
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• Nies AT, König J, Hofmann U, Kölz C, Fromm MF, Schwab M. Interaction of Remdesivir with Clinically Relevant Hepatic Drug Uptake Transorters. Pharmaceutics. 2021 Mar 10;12(3):369. DOI: 10.3390/pharmaceutics130369. PMID: 33802215; PMCID: PMC7999182.
• Oehm, Johannes et al. “FhirExtinguisher: A FHIR Resource Flattening Tool Using FHIRPath.” Studies in health technology and informatics vol. 281 (2021): 1112-1113. doi:10.3233/SHTI210369
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• Osswald L, Hamarsheh S, Uhl FM, Andrieux G, Klein C, Dierks C, Duquesne S, Braun LM, Schmitt-Graeff A, Duyster J, Boerries M, Brummer T, Zeiser R. "Oncogenic KrasG12D Activation in the Nonhematopoietic Bone Marrow Microenvironment Causes Myelodysplastic Syndrome in Mice" Mol Cancer Res 2021; 19:1596-1608. DOI: 10.1158/1541-7786.MCR-20-0275.
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• Preciado-Marquez, Daniel et al. “MainzelHandler: A Library for a Simple Integration and Usage of the Mainzelliste.” Studies in health technology and informatics vol. 281 (2021): 233-237. doi:10.3233/SHTI210155
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• Reimer N, Unberath P, Busch H, Börries M, Metzger P, Ustjanzew A, Renner C, Prokosch HU, Christoph J: "Challenges and Experiences Extending the cBioPortal for Cancer Genomics to a Molecular Tumor Board Platform." Stud Health Technol Inform 2021;287: p. 139-143. DOI: 10.3233/SHTI210833.
  To the publication
• Reimer N, Unberath P, Busch H, Ingenerf J: "FhirSpark – Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics." Stud Health Technol Inform 2021; 281: p. 303-307.
  DOI: 10.3233/SHTI210169
  To the publication
• Reinecke I, Zoch M, Reich C, Sedlmayr M, Bathelt F: "The usage of OHDSI OMOP – A Scoping Review." Stud Health Technol Inform 2021: p. 283:95-103. DOI: 10.3233/SHTI210546.
  To the publication
• Rinaldi E and Thun S (2021): "From OpenEHR to FHIR and OMOP Data Model for Microbiology Findings." Stud Health Technol Inform. 281: p. 402-406, 2021.
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• Rinaldi E, Saas J and Thun S (2021): "Use of LOINC and SNOMED CT with FHIR for Microbiology Data." Stud Health Technol Inform. 278: p. 156-162, 2021. 
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• Sass J, Zabka S, Essenwanger A, Schepers J, Boeker M, Thun S: "Fast Healthcare Interoperability Resources (FHIR®) Representation of Medication Data Derived from German Procedure Classification Codes (OPS) Using Identification of Medicinal Products (IDMP) Compliant Terminology." Stud Health Technol Inform 2021; 278: p. 231-236. DOI: 10.3233/SHTI210074.
  To the publication
• Schaaf J, Sedlmayr M, Prokosch HU, Tegtbauer N, Kadioglu D, Schaefer J, Boeker M, Storf H: "Visualization of Similar Patients in a Clinical Decision Support System for Rare Diseases – A Focus Group Study." Stud Health Technol Inform 2021; 278: p. 49-57. DOI: 10.3233/SHTI210050.
  To the publication
• Schaaf, J., Sedlmayr, M., Sedlmayr, B. et al. Evaluation of a clinical decision support system for rare diseases: a qualitative study. BMC Med Inform Decis Mak 21, 65 (2021).
  DOI: 10.1186/s12911-021-01435-8
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• Scherag A. 2021 23(3/2021)76-79. It's the research question, stupid!. mdi - Forum der Medizin, Dokumentation und Medizin-Informatik.
• Schulz S, Fix S, Klügl P, Bachmayer T, Hartz T, Richter M, Herm-Stapelberg N, Daumke P, Comparative evaluation of automated information extraction from pathology reports in three German cancer registries, GMS Med Inform Biom Epidemiol 2021; 17(1):Doc01 (20210331), DOI: 10.3205/mibe000215
  To the publication
• Schüttler C, Prokosch HU, Sedlmayr M, Sedlmayr B: "Evaluation of Three Feasibility Tools for Identifying Patient Data and Biospecimen Availability: Comparative Usability Study." JMIR Med Inform 2021;9(7):e25531, DOI: 10.2196/25531.
  To the publication
• Schüttler J, Mang JM, Kapsner LA, Seuchter SA, Binder H, Zöller D et al (2021): "Letalität von Patienten mit COVID-19: Untersuchungen zu Ursachen und Dynamik an deutschen Universitätsklinika." Anästh. Intensivmed 2021; 62: p. 244–257. DOI: 10.19224/ai2021.244
• Sedlmayr B, Sedlmayr M, Kroll B, Prokosch HU, Gründner J , Schüttler C. Improving collaborative COVID-19 research of University Hospitals in Germany: Formative usability evaluation of the CODEX-Feasibility Portal. Accepted for Publication in Applied Clinical Informatics.
• Sicklinger F, Meyer IS, Li X, Radtke D, Dicks S, Kornadt MP, Mertens C, Meier JK, Lavine KJ, Zhang Y, Kuhn TC, Terzer T, Patel J, Boerries M, Schramm G, Frey N, Katus HA, Voehringer D, Leuschner F. Basophils balance healing after myocardial infarction via IL-4/IL-13. J Clin Invest 2021; 131:e136778. DOI: 10.1172/JCI136778.
  To the publication
• Spreckelsen C, Schemmann U, Phan-Vogtmann LA, Scherag A, Winter A, Schneider B., Health Informatics Learning Objectives on an Interoperable, Collaborative Platform. Stud Health Technol Inform. 2021; 281:1019-1020. DOI: 10.3233/SHTI210335.
  To the publication
• Then MI, Andrikyan W, Maas R, Fromm MF. 2021. Prescription of QT interval prolonging drugs in Germany and discrepancies between their Summary of Product Characteristics and the international CredibleMeds® database. Naunyn-Schmiedeberg’s Archives of Pharmacology / German Pharm-Tox Summit 2022.
• Then MI, Andrikyan W, Maas R, Fromm MF. 2021. Use of QT interval prolonging drugs in Germany and discrepancies between the Summary of Product Characteristics and the international CredibleMeds® reference list. DPhG Annual Meeting 2021.
• Uciteli A, Beger C, Wagner J, Kirsten T, Meineke FA, Stäubert S, Löbe M, Herre H, Ontological modelling and FHIR Search based representation of basic eligibility criteria, GMS Med Inform Biom Epidemiol 2021;17(2): DOI: 10.3205/mibe000219
  To the publication
• Uciteli A, Beger C, Wagner J, Kiel A, Meineke FA, Stäubert S, Löbe M, Hänsel R, Schuster J, Kirsten T, Herre H , Ontological Modelling and Execution of Phenotypic Queries in the Leipzig Health Atlas, Stud Health Technol Inform, 2021; 278:66-74. DOI: 10.3233/SHTI210052.
  To the publication
• Ustjanzew A, Desuki A, Ritzel C, Dolezilek AC, Wagner DC, Christoph J, Unberath P, Kindler T, Faber J, Marini F, Panholzer T, Paret C. cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board. BMC Med Inform Dec Mak 2021, 21:358. DOI: 110.1186/s12911-021-01719-z.
  To the publication 
• Varghese, Julian et al. “Persistent symptoms and lab abnormalities in patients who recovered from COVID-19.” Scientific reports vol. 11,1 12775. 17 Jun. 2021, doi:10.1038/s41598-021-91270-8
  to the publication 
• Walther T, Farin E, Boeker M, Prokosch HU, Binder B, Praus F, Ploner N, Fichtner UA, Horki P, Haeuslschmid R, Seuchter S, Gratzke C, Schoenthaler M: "RECUR – Aufbau eines automatisierten digitalen Registers für Patient*innen mit rezidivierenden Steinen des oberen Harntraktes." Gesundheitswesen 2021; 83: p. 27-S32. DOI: 10.1055/a-1651-0311.
  To the publication
• Wettstein R, Hund H, Kobylinski I,  Fegeler C and Heinze  O (2021): "Feasibility Queries in Distributed Architectures - Concept and Implementation in HiGHmed." Studies in Health Technology and Informatics, 278: p. 134-141, 2021.
  To the publication 
• Zoch M, Gierschner C, Peng Y, Gruhl M, Leutner LA, Sedlmayr M, Bathelt F: "Adaption of the OMOP CDM for Rare Diseases." Stud Health Technol Inform 2021; 281: p. 138-142. DOI: 10.3233/SHTI210136.
  To the publication

2020:

• Becker L, Ganslandt T, Prokosch HU, Newe A (2020): "Applied Practice and Possible Leverage Points for Information Technology Support for Patient Screening in Clinical Trials: Qualitative Study". JMIR Med Inform.
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• Bild R, Bialke M, Buckow K, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Roschka S, Schreiweis B, Stäubert S, Zenker S, Prasser F (2020): "Towards a comprehensive and interoperable representation of consent-based data usage permissions in the German medical informatics initiative". BMC Medical Informatics and Decision Making, 2020, 20:103.
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• Brat GA, Weber GM, Gehlenborg N et al. (2020): "International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.". npj Digi. Med 3, 109 (2020)
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• Buechner P, Hinderer M, Unberath P, Metzger P, Boeker M, Acker T, Haller F, Mack E, Nowak D, Paret C, Schanze D, von Bubnoff N, Wagner S, Busch H, Boerries M, Christoph J. Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal. Diagnostics 2020; 10, 93. DOI:10.3390/diagnostics10020093.
  To the publication 
• Borchert F, Lohr C, Modersohn L, Langer T, Follmann M, Sachs JP, Hahn U, Schapranow MP, GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines, Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020, pages 38-48, https://www.aclweb.org/anthology/2020.louhi-1.5/
  To the publication
• Faessler E, Modersohn L, Lohr C, Hahn U: Progene – A Large-scale, High-Quality Protein-Gene Annotated Benchmark Corpus. Proceedings of the 12th Conference on Language Resources and Evaluation (LREC 2020) pages 4587-4598, Marseille, 11-16 May 2020
  To the publication
• Faessler E, Oleynik M, Hahn U, What Makes a Top-Performing Precision Medicine Search Engine? Tracing Main System Features in a Systematic Way, InProceedings of the 43rd International ACM SIGIRConference on Research and Development in Information Retrieval (SIGIR ’20),July 25–30, 2020, Virtual Event, Xi’an, China.ACM, New York, NY, USA,10 pages, DOI: 10.1145/3397271.3401048
• Fechner, Maximilian et al. “Evaluation of openEHR Repositories Regarding Standard Compliance.” Studies in health technology and informatics vol. 270 (2020): 592-596. doi:10.3233/SHTI200229
  To the publication 
• Fuchs M, Kreutzer FP, Kapsner L.A, Mitzka S, Just A, Perbellini F, Terracciano CM, Xiao K, Geffers R, Bogdan C, Prokosch, HU, Fiedler J, Thum T, Kunz M. Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies. Int J Mol Sci 2020; 21, 4727. DOI: 10.3390/ijms21134727.
  To the publication 
• Gruendner J, Wolf N, Tögel L, Haller F, Prokosch HU, Christoph J. (2020) Integrating Genomics and Clinical Data for Statistical Analysis by Using GEnome MINIng (GEMINI) and Fast Healthcare Interoperability Resources (FHIR): System Design and Implementation; JMIR 2020;22:e19879.
  To the publication
• Gruhl M, Reinecke I, Sedlmayr M.(2020). "Specification and Distribution of Vocabularies Among Consortial Partners" Stud Health Technol Inform 2020;270:1393-1394
  To the publication
• Gleim LC, Karim MR, Zimmermann L, Kohlbacher O, Stenzhorn H, Decker S, Beyan O, Enabling ad-hoc reuse of private data repositories through schema extraction,. Journal of Biomedical Semantics 11(6), 2020, DOI:10.1186/s13326-020-00223-z
  To the publication
• Hagel S, Gantner J, Spreckelsen C, Fischer C, Ammon D, Saleh K, Phan-Vogtmann LA, Heidel A, Müller S, Helhorn A, Kruse HM, Thomas E, Rißner4 F, Haferkamp S, Vorwerk J, Deffge S, Juzek-Küpper MF, Lippmann N, Lübbert C, Trawinski H, Wendt S, Wendt T, Dürschmid A, Konik M, Moritz S, Tiller D, Röhrig R, Pletz M, Scherag A: A hospital-wide electronic medical record-based computerized decision support system to improve outcomes of patients with staphylococcal bloodstream infection (HELP). Study protocol for a multicenter stepped-wedge cluster randomized trial. BMJ Open 2020;10(2):e033391. DOI:10.1136/bmjopen-2019-033391
  To the publication
• Hahn U, Oleynik M, Medical Information Extraction in the Age of Deep Learning, Yearb Med Inform. 2020 Aug; 29(1): 208–220, 2020, DOI: 10.1055/s-0040-1702001  
• Jaravine V, Balmford J, Metzger P, Boerries M, Binder H, Boeker M (2020): "Annotation of Human Exome Gene Variants with Consensus Pathogenicity" Genes 11 (9), 1076.     
  To the publication
• Kapsner LA, Kampf MO, Seuchter SA, Gruendner J, Gulden C, Mate S,… Acker T, Boeker M, Kaisers UX, Kestler HA, Prokosch HU. 2020. 13:8:594117. Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown. Frontiers in Public Health. DOI: 10.3389/fpubh.2020.594117
  To the publication
• Kesselmeier M, Benda N, Scherag A, Effect size estimates from umbrella designs: Handling patients with a positive test result for multiple biomarkers using random or pragmatic subtrial allocation, PLoS One. 2020; 15(8): e0237441, 2020, DOI: 10.1371/journal.pone.0237441  
• Klingner CM, Ritter P, Brodoehl S, Gaser C, Scherag A, Güllmar D, Rosenow F, Ziemann U, Witte OW, Research data management in clinical neuroscience: the national research data infrastructure initiative, Neuroforum 2020, DOI:10.1515/nf-2020-0039 
• Kunze J, Fritsch S, Peine A, Maaßen O, Marx G, Bickenbach J, Management of ARDS: From ventilation strategies to intelligent technical support – Connection the dots, J Trend in Anaesthesia and Critical Care; 2020; DOI: 10.1016/j.tacc.2020.05.005
• Langenbruch, Lisa et al. “Blood and cerebrospinal fluid immune cell profiles in patients with temporal lobe epilepsy of different etiologies.” Epilepsia vol. 61,10 (2020): e153-e158. doi:10.1111/epi.16688
  To the publication 
• Lenz S, Hess M, Binder H, Unsupervised deep learning on biomedical data with BoltzmannMachines.jl; doi.org/10.1101/578252
  To the publication
• Löbe M, Matthies F, Stäubert S, Meineke FA, Winter A, Problems in FAIRifying Medical Datasets, Stud Health Technol Inform 2020;270:392-396. DOI: 3233/SHTI200189
• Lohr C, Modersohn L, Hellrich J, Kolditz T, Hahn U, An Evolutionary Approach to the Annotation of Discharge Summaries, Studies in Health Technology and Informatics, 2020, Ebook: Volume 270: Digital Personalized Health and Medicine, 28-32, DOI: 10.3233/SHTI200116
• Maassen O, Fritsch S, Gantner J, Saskia Deffge S, Kunze J, Marx G, Bickenbach J, Future Mobile Device Usage, Requirements, and Expectations of Physicians in German University Hospitals: Web-Based Survey, J Med Internet Res, 2020;22(12):e23955. DOI: 10.2196/23955.
• Marx G, Fritsch S, Bickenbach J, Kunze J, Maaßen O, Deffge S, Haferkamp S, Schuppert A, big data und smartphones auf der intensivstation, Wie Smartphone und Künstliche Intelligenz dabei helfen,beatmete Patienten zu behandeln, gesundhyte.de, 2020, Ausgabe 13, 30-33
  To the publication
• Müller M, Petzold M, Wunderlich M, Baumgartl T, Höhn M, Eichel V, ... and von Landesberger T (2020): "Visual analysis for hospital infection control using a RNN model." EuroVis Work. Vis. Ana. (EuroVA). The Eurographics Association, 2020.
  To the publication
• Ploner N, Prokosch HU. (2020)Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:158-162.
  To the publication
• Pokora RM, Le Cornet L, Daumke P, Mildenberger P, Zeeb H, Blettner M. 2020. 82(S 02):S158-S164. Validation of Semantic Analyses of Unstructured Medical Data for Research Purposes. Gesundheitswesen. DOI: 10.1055/a-1007-8540
• Pugliese P, Knell C, Christoph J (2020) Exchange of Clinical and Omics Data According to FAIR Principles: A Review of Open Source Solutions; Methods Inf Med. 2020;59(S 01):e13-e20
  To the publication
• Rau H, Geidel L, Bialke M, Blumentritt A, Langanke M, Liedtke W, Pasewald S, Stahl D, Bahls T, Maier C, Prokosch HU, Hoffmann W.(2020) The generic Informed Consent Service gICS®: implementation and benefits of a modular consent software tool to master the challenge of electronic consent management in research; J Transl Med 18, 287 (2020).
  To the publication 
• Reinecke I, Gulden C, Kümmel M, Nassirian A, Blasini R, Sedlmayr M.(2020) Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:1393-1394
  To the publication
• Sadik A, Patterson LFS, Öztürk S, Mohapatra SR, Panitz V, Secker FS, Pfänder P, Loth S, Salem H, Prentzell MT, Berdel B, Iskar M, Faessler E, Reuter F, Kirst I, Kalter V, Foerster KI, Jäger E, Guevara CR, Sobeh M, Hielscher T, Poschet G, Reinhardt A, Hassel JC, Zapatka M, Hahn U, von Deimling A, Hopf C, Schlichting R, Escher BI, Burhenne J, Haefeli WE, Ishaque N, Böhme A, Schäuble S, Thedieck K, Trump S, Seiffert M, Opitz CA, IL4I1 Is a Metabolic Immune Checkpoint that Activates the AHR and Promotes Tumor Progression, CELL, 182(5), 2020, 1252-1270.e34, DOI:10.1016/j.cell.2020.07.038
  To the publication
• Schaaf J, Prokosch HU,  Boeker M, Schaefer J, Vasseur J, Storf H, Sedlmayr M. (2020) Interviews with experts in rare diseases for the development of clinical decision support system software - a qualitative study; BMC Med Inform Decis Mak 20, 230     
  To the publication
• Schaaf J, Sedlmayr M, Prokosch HU, Ganslandt T, Schade-Brittinger C, von Wagner M, Kadioglu D, Schubert K, Lee-Kirsch MA, K. Kraemer BK, Winner B, Mueller T,  Schaefer JR, Wagner TOF, Bruckner-Tuderman L, Tuescher O, Boeker M, Storf H.(2020) The Status Quo of Rare Diseases Centres for the Development of a Clinical Decision Support System – A Cross-Sectional Study; Stud Health Technol Inform 2020;271:176-183
  To the publication
• Scheible R, Kadioglu D, Ehl S, Blum M, Boeker M, Folz M, Grimbacher B, Göbel J, Klein C, Nieters A, Rusch S, Kindle G, Storf H. "Enabling External Inquiries to an Existing Patient Registry by Using the Open Source Registry System for Rare Diseases: Demonstration of the System Using the European Society for Immunodeficiencies Registry." JMIR Med Inform 2020; 8:e17420. DOI: 10.2196/17420.
  To the publication 
• Schemmann U, Schneider B, Phan-Vogtmann LA, Müller S, Spreckelsen C. Agiles Lernziel- management mit dem Health Informatics-Learning Objective Navigator (HI-LONa). Jahrestagung der Gesellschaft für Medizinische Ausbildung (GMA) Zürich, 09.-12.09.2020, DOI: 10.3205/20gma065
  To the publication
• Schneider B, Schemmann U, Phan-Vogtmann LA, Kropf S, Spreckelsen C, Health Informatics-Learning Objektiv Navigator (HI-LONa) – eine Open-Access-Plattform für ein agiles Lernzielmanagement, GMDS Meeting 06.-09.09.2020, DOI:10.3205/20gmds164
  To the publication 
• Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T; Datenintegrationszentrum – Drehscheibe für Daten in der medizinischen Forschung und Versorgung: Datenintegration und ihre Voraussetzungen. In: gesundhyte.de: das Magazin für Digitale Gesundheit in Deutschland 11 (2020), Nr. 13, S. 84–87, ISSN: 2702-2544
• Uciteli A, Beger C, Kirsten T, Meineke FA, Herre H, Ontological representation, classification and data-driven computing of phenotypes, J of Biomedical Semantics, 2020, 11(15), DOI:10.1186/s13326-020-00230-0
  To the publication
• Wettstein R, Merzweiler A, Klass M and Heinze O. (2020): "Using openEHR in XDS.b Environments – Opportunities and Challenges." Studies in Health Technology and Informatics, 272, p. 300, 2020. 
  To the publication
• Wulff A, Ballout S, Gietzelt M, Marschollek M, Scheithauer S, and the HiGHmed infection control study group (2020): “A Report on Data Modelling for Infection Control in HiGHmed." Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020.
  To the publication
• Zabka S, Schulz S, Brunner O, Boeker M. "How versioning of terminology systems can be supported by ontological models – a case study on TNM tumor classification." Applied Ontology, vol. 15, no. 1, pp. 41-60, 2020.  DOI: 10.3233/AO-190220.  
  To the publication
• Zierk J, Arzideh F, Kapsner LA, Prokosch HU, Metzler M, Rauh M. "Reference Interval Estimation from Mixed Distributions using Truncation Points and the Kolmogorov-Smirnov Distance (kosmic)." Sci Rep. 2020, 10, 1704. DOI: 10.1038/s41598-020-58749-2.
  To the publication
• Zierk J, Krebs A, Rauh M, Metzler M, Löscher A, Strasser E, Krause SW. "Blood counts in adult and elderly individuals: defining the norms over eight decades of life." Br J Haematol. DOI: 10.1111/bjh.16430.
  To the publication
• Buechner P, Hinderer M, Unberath P, Metzger P, Boeker M, Acker T, Haller F, Mack E, Nowak D, Paret C, Schanze D, von Bubnoff N, Wagner S, Busch H, Boerries M, Christoph J. "Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal." Diagnostics 2020, 10, 93. DOI:10.3390/diagnostics10020093. 
  To the publication
• Fuchs M, Kreutzer FP, Kapsner L.A, Mitzka S, Just A, Perbellini F, Terracciano CM, Xiao K, Geffers R, Bogdan C, Prokosch, HU, Fiedler J, Thum T, Kunz M. (2020). "Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies." Int. J. Mol. Sci. 2020, 21, 4727
  To the publication
• Zabka S, Schulz S, Brunner O, Boeker M. "How versioning of terminology systems can be supported by ontological models – a case study on TNM tumor classification." Applied Ontology 2020; 15:41-60. DOI: 10.3233/AO-190220.
  To the publication 
• Zacher B, Haller S, Kramer R and Eckmanns T (2020): "A machine learning framework for outbreak detection in infectious disease surveillance systems [poster]." Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020. 
• Zierk J, Krebs A, Rauh M, Metzler M, Löscher A, Strasser E, Krause SW. "Blood counts in adult and elderly individuals: defining the norms over eight decades of life." Br J Haematol. DOI: 10.1111/bjh.16430.
  To the publication 

2019:

• Aguduri L S, Merzweiler A, Yüksekogul N, Meyer N, Brandner A und Heinze O (2019): "Modeling Clinical Data Transformation for a Medical Data Integration Center: An openEHR Approach." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 2019.
  To the publication
• Ammon D, Bietenbeck A, Boeker M, Ganslandt T, Heckmann S, Heitmann K, Sax U, Schepers J, Semler SC, Thun S, Zautke A (2019): "Der Kerndatensatz der Medizininformatik-Initiative – Interoperable Spezifikation am Beispiel der Laborbefunde mittels LOINC und FHIR." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 113-117.
• Ammon D, Bietenbeck A, Boeker M, Ganslandt T, Heckmann S, Heitmann K, Sax U, Schepers J, Semler SC, Thun S, Zautke A. 2019 43:25-28. Der Kerndatensatz der Medizininformatik-Initiative - Spezifikation in ART-DECOR und als FHIR-Profile. HL7-Mitteilungen 25.
• Beier K, Schweda M, Schicktanz S (2019): "Taking patient involvement seriously: a critical ethical analysis of participatory approaches in data-intensive medical research". BMC Medical Informatics and Decision Making. 19: p. 90, 2019
  To the publication
• Bild R, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Schreiweis B , Stäubert S, Zenker S, Bialke M, Prasser F. "Erster Schritt: Im Rahmen der Medizininformatik-Initiative des Bundesforschungsministeriums ist eine elektronische Abbildung von Informationen aus Patienten-Einwilligungserklärungen entwickelt worden" E-HEALTH-COM 2019; 2_3:50-53.
  To the publication 
• Bott OJ, Semler SC (2019): "Editorial." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 95.
• Buckow K, Ammon D, Bild R, Boeker M, Ganslandt T, Haarbrandt B, Haferkamp S, Sax U, Schepers J, Schreiweis B, Stenzhorn H (2019): »Interoperabilität – Konvergenz unterschiedlicher Informationsmodelle.« mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 110-112.
• Daumke P, Heitmann KU, Heckmann S, Martínez-Costa C, Schulz S. "Clinical Text Mining on FHIR" Stud Health Technol Inform 2019 ;264:83-87. DOI: 10.3233/SHTI190188.
  To the publication 
• Faessler E, Oleynik M, Hahn U. 2019. JULIE lab & Med Uni Graz @ TREC 2019 Precision Medicine Track. TREC 2019 - Proceedings of the 28th Text Retrieval Conference.
• Ganslandt T, Neumaier M. "Digital networks for laboratory data: potentials, barriers and current initiatives" Clin Chem Lab Med 2019 ;57:336-342. DOI: 10.1515/cclm-2018-1131.
  To the publication 
• Gruendner J, Prokosch HU, Schindler S, Lenz S, Binder H (2019): "A Queue-Poll Extension and DataSHIELD: Standardised, Monitored, Indirect and Secure Access to Sensitive Data." Stud Health Technol Inform. 258: 115-119. 
  To the publication
• Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D. KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services. PLoS ONE 14(10): e0223010.  
  To the publication
• Gulden C, Kirchner M, Schüttler C, Hinderer M, Kampf M, Prokosch HUP, Toddenroth D (2019): "Extractive summarization of clinical trial descriptions." Int J Med Inform. 2019;129:114-121.   
  To the publication
• Gulden C, Landerer I, Nassirian A, Altun FB, Andrae J (2019). "Extraction and Prevalence of Structured Data Elements in Free-Text Clinical Trial Eligibility Criteria." Stud Health Technol Inform. 258: 226-230. PubMed PMID: 30942751. 
  To the publication
• Gulden C, Mate S, Prokosch HU, Kraus S; Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-3 
  To the publication
• Hampf C, Bahls T, Hund H, Drepper J, Lablans M, Speer R (2019): "Record Linkage: Optionen für standortübergreifende Datenzusammenführungen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 117-121. 
• Hasselblatt H, Andrae J, Tassoni A, Fitzer K, Bahls T, Prokosch HU, Boeker M (2019): "Establishing an Interoperable Clinical Trial Information System Within MIRACUM." Stud Health Technol Inform. 258: 216-220. 
  To the publication
• Hashemian ND, Kasáč Z, Goda Z, Semlitsch A, Schulz S. 2019. 264:153-157. Building an Experimental German User Interface Terminology Linked to SNOMED CT. Studies in Health Technology and Informatics. DOI: 10.3233/shti190202
  To the publication
• Heberle AM, Razquin Navas P, Langelaar-Makkinje M, Kasack K, Sadik A, Faessler E, Hahn U, Marx-Stoelting P, Opitz CA, Sers C, Heiland I, Schäuble S, Thedieck K, The PI3K and MAPK/p38 pathways control stress granule assembly in a hierarchical manner In: Life Science Alliance, Vol.2, No.2, e201800257, PMID: 30923191, DOI:10.26508/lsa.201800257
  To the publication
• Helhorn A, Saleh K, Kruse H M, Phan-Vogtmann LA, Thomas E, Heidel A J, Scherag A, Ammon D (2019). Abgleich technischer Spezifikationen bei der Datentransformation proprietärer Formate in den Interoperabilitätsstandard HL7 FHIR. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS), Dortmund, 8–11 September 2019. DOI: 10.3205/19gmds155 (Poster PDF)
• Hellrich J, Kampe B, Hahn U (2019). The Influence of Down-Sampling Strategies on SVD Word Embedding Stability. RepEval 2019 – Proceedings of the Third Workshop on Evaluating Vector Space Representations for NLP @ NAACL 2019. Minneapolis, MN, USA, 6 June 2019, 18–26. DOI: 10.18653/v1/W19-2003
• Hemmer B, Börries M, Christoph J, Marx G, Maaßen O, Schuppert A, Scheithauer S (2019): "Die klinischen Anwendungsbeispiele (Use Cases) der vier MII-Konsortien." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 98-102. 
• Kampf MO, Kraska D, Prokosch HU (2019): "An Analysis of Erlangen University Hospital’s Billing Data on Utility-Based De-Identification." Stud Health Technol Inform. 258: 70-74.        
  To the publication
• Kamdje-Wabo G, Gradinger T, Löbe M, Lodahl R, Seuchter SA, Sax U, Ganslandt T., Towards Structured Data Quality Assessment in the German Medical Informatics Initiative: Initial Approach in the MII Demonstrator Study, Stud Health Technol Inform. 2019; 264:1508-1509. DOI: 10.3233/SHTI190508.       
  To the publication
• Kapsner LA, Kampf MO, Seuchter SA, Kamdje-Wabo G, Gradinger T, Ganslandt T, Mate S, Guendner J, Kraska D, Prokosch HU. Moving Towards an EHR Data Quality Framework: The MIRACUM Approach. Stud Health Technol Inform. 2019;267: p.247-253.   
  To the publication
• Kindermann A, Stepanova E, Hund H, Geis N, Malone B and Dieterich C (2019): "MedEx - Data Analytics for Medical Domain Experts in Real-Time." Studies in Health Technology and Informatics. 267: p. 142-149, 2019.
  To the publication
• Kruse H M, Helhorn A, Phan-Vogtmann LA, Thomas E, Heidel A J, Saleh K, Scherag A, Ammon D: Modeling a Graph Data Model for FHIR Resources. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS), Dortmund, 8–11 September 2019. DOI: 10.3205/19gmds160 (Poster PDF)
  To the publication
• Kolditz T, Lohr C, Hellrich J, Modersohn L, Betz B, Kiehntopf M, Hahn U, Annotating German Clinical Documents for De-Identification., Stud Health Technol Inform. 2019;264: 203-207. DOI: 10.3233/SHTI190212
  To the publication
• Lenz S, Hess M, Binder H. "Unsupervised deep learning on biomedical data with BoltzmannMachines.jl
  Preprint Server bioRxiv."
  To the publication 
• Lohr C, Kiesel J, Luther S, Hellrich J, Kolditz T, Stein B, Hahn U; Continuous quality control and advanced text segment annotation with WAT-SL 2.0, In: LAW XIII 2019 – Proceedings of the 13th Linguistic Annotation Workshop @ ACL 2019. Florence, Italy, August 1, 2019. A. Friedrich & D. Zeyrek (Eds.), Stroudsburg/PA: Associationfor Computational Linguistics (ACL), 2019, pp. 215–219: DOI: 10.18653/v1/W19-4025
• Löbe M, Beyan O, Stäubert S, Meineke F, Ammon D, Winter A, Decker S, Löffler M, Kirsten T, Design of Metadata Services for Clinical Data Interoperability in Germany, Stud Health Technol Inform. 2019; 264:1528-1529. DOI: 10.3233/SHTI190518
  To the publication 
• Mate S, Bürkle T, Kapsner LA, Toddenroth D, Kampf M, Sedlmayr M, Castellanos I, Prokosch HU, Kraus S.A Method for the Graphical Modeling of Relative Temporal Constraints. J Biomed Inform. 2019, 100. doi: 10.1016/j.jbi.2019.103314. 
  To the publication
• Meineke FA, Stäubert S, Löbe M, Uciteli A, Löffler M, Design and Concept of the SMITH Phenotyping Pipeline., Stud Health Technol Inform. 2019; 267:164-172. DOI: 10.3233/SHTI190821
  To the publication
• Öfelein M, Reichold M, Maier C, Prokosch HU. Designing a Framework of Components to Support Patient Engagement in Research. Stud Health Technol Inform. 2019;267:20-27.                 
  To the publication 
• Phan-Vogtmann LA, Helhorn A, Kruse HM, Thomas E, Heidel AJ, Saleh K, Rissner F, Specht M, Henkel A, Scherag A, Ammon D, Approaching Clinical Data Transformation from Disparate Healthcare IT Systems Through a Modular Framework., Stud Health Technol Inform. 2019;258:85-89. DOI:10.3233/978-1-61499-959-1-85
• Phan-Vogtmann LA, Kruse H M, Helhorn A, Heidel A J, Thomas E, Saleh K, Scherag A, Ammon D: Rückverfolgbarkeit für künstliche Intelligenz: Umsetzung einer Traceability-Strategie bei der modellgetriebenen Entwicklung klinischer Entscheidungsunterstützungssysteme. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS), Dortmund, 8–11 September 2019. DOI: 10.3205/19gmds183 (Poster PDF)             
  To the publication
• Richter-Pechanski P, Amr A, Katus HA, Dieterich C (2019): " Deep Learning Approaches Outperform Conventional Strategies in De-Identification of German Medical Reports." Studies in Health Technology and Informatics. 267: p. 101-109, 2019
  To the publication
• Sargeant A, von Landesberger T, Baier C, Bange F, Dalpke A, Eckmanns T et al. (2019): "Early Detection of Infection Chains & Outbreaks: Use Case Infection Control."
  ICT for Health Science Research, Stud Health Technol Inform. 258: p. 245-246, 2019
  To the publication
• Schmücker P, Schemmann U, Winter A, Bott OJ, Knaup-Gregori P, Lautenbacher H, Phan-Vogtmann LA, Scherag A, Sohrabi K, Spreckelsen C (2019): "Aus-, Fort- und Weiterbildung in der Medizininformatik-Initiative." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 102-105.
• Schneiderheinze H, Prokosch HU, Apel H, Bellut L, Wullich B, Trollmann R, Schüttler C. Development and usability analysis of a multimedia eConsent solution. Stud Health Technol Inform. 2019; 267: 297-303.    
  To the publication
• Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T (2019): "Das Datenintegrationszentrum – Ausgangspunkt für die datengetriebene medizinische Forschung und Versorgung." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 106-110.
• Semler SC (2019): "Die Medizininformatik-Initiative als Impulsgeber für Standardisierung und Datennutzung im deutschen Gesundheitswesen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 96-98.
• Sommer M, Kirchner M, Gulden C, Egloffstein S, Lux MP, Beckmann MW, Mackensen A, Prokosch HU (2019). "Design and Implementation of a Single Source Multipurpose Hospital-Wide Clinical Trial Registry." Stud Health Technol Inform. 258: 164-168.  
  To the publication
• Tahar K, Müller C, Dürschmid A, Haferkamp S, Saleh K, Jürs P, Stäubert S, Gewehr JE, Zenker S, Ammon D, Wendt T, Integrating Heterogeneous Data Sources for Cross-institutional Data Sharing: Requirements Elicitation and Management in SMITH, medInfo 2019; 264:1785-1786. DOI: 10.3233/SHTI190647
  To the publication
• Uciteli A, Beger C, Kirsten T, Meineke FA, Herre H: Ontological Modelling and Reasoning of Phenotypes, in Proceedings of the Joint Ontology Workshops (JOWO) 2019, Episode V: The Styrian Autumn of Ontology, Graz, Austria, 2019
  To the publication
• Unberath P, Knell C, Prokosch HU, Christoph J (2019). "Developing New Analysis Functions for a Translational Research Platform: Extending the cBioPortal for Cancer Genomics." Stud Health Technol Inform. 258: 46-50.    
  To the publication
• Vengadeswaran A, Neuhaus P, Hegselmann S, Storf H, Kadioglu D. Semantically annotated Metadata: Interconnecting Samply.MDR and MDM-Portal. Stud Health Technol Inform. 2019;267:86-92.
  To the publication
• Vey J, Kapsner LA, Fuchs M, Unberath P, Veronesi G, Kunz M. A Toolbox for Functional Analysis and the Systematic Identification of Diagnostic and Prognostic Gene Expression Signatures Combining Meta-Analysis and Machine Learning.  Cancers 2019, 11, 1606; doi:10.3390/cancers11101606.
  To the publication
• von Landesberger T, Wunderlich M, Baumgartl T, Höhn M, Marschollek M, Seithauer S (2019): "Visual-Interactive Exploration of Pathogen Outbreaks in Hospitals." EuroVis (Posters): p. 9-11, 2019
  To the publication
• Walther D, Paret C, Ritzel C, Büchner P, Unberath P, Maier W, Metzger P, Christoph J, Storf H, Boerries M, Wagner S. "Definition of an annotation pipeline for a molecular tumor board focused on the processing of the result and oncological drugs in terms of usability and approval status." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS). Dortmund, 08.-11.09.2019. Düsseldorf: German Medical Science GMS Publishing House; 2019. DocAbstr. 283. doi: 10.3205/19gmds179
• Wulff A, Sommer KK, Ballout S, HiGHmed Consortium, Haarbrandt B, Gietzelt M (2019): "A Report on Archetype Modelling in a Nationwide Data Infrastructure Project." Studies in Health Technology and Informatics. 258: p. 146-150, 2019
  To the publication
• Wunderlich M, Block I, von Landesberger T, Petzold M, Marschollek M, Scheithauer S (2019): "Visual Analysis of Probabilistic Infection Contagion in Hospitals." Vision, Modeling, and Visualization.
  p. 143-150, 2019
  To the publication
• Yüksekogul N, Meyer N, Aguduri L S, Merzweiler A and Heinze O (2019): "Implementing ETL-processes for a Medical Data Integration Center - First experiences from the Heidelberg University Hospital." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 2019.
  To the publication
•  Zabka S, Ammon D, Ganslandt T, Gewehr J, Haverkamp C , Kiefer S, Lautenbacher H, Löbe M, Thun S, Boeker M. "Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP)." Proceedings of the Joint Ontology Workshops 2019, Episode V: The Styrian Autumn of Ontology, Graz, Austria, September 23-25, 2019. Edited by Adrien Barton, Selja Seppälä, Daniele Porello, Vol-2518.
  To the publication
• Zacher B, Czogiel (2019): "Supervised learning improves disease outbreak detection." Robert Koch Institute, Department of Infectious Diseases, 2019.
  To the publication

2018:

• Bietenbeck A, Boeker M, Schulz S. "NPU, LOINC, and SNOMED CT: a comparison of terminologies for laboratory results reveals individual advantages and a lack of possibilities to encode interpretive comments" Journal of Laboratory Medicine 2018; 42: 267-275. DOI: 10.1515/labmed-2018-0103.
  To the publication 
• Ganslandt T, Boeker M, Löbe M, Prasser F, Schepers J, Semler SC, Thun S, Sax U (2018). "Der Kerndatensatz der Medizininformatik-Initiative: Ein Schritt zur Sekundärnutzung von Versorgungsdaten auf nationaler Ebene." Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), Heft 1, März 2018, Jahrgang 20.
  To the publication
• Gehring S, Eulenfeld R (2018): "German Medical Informatics Initiative: Unlocking Data for Research and Health Care." Methods of Information in Medicine.  57(S 01): e46–e49, 2018
  To the publication
• Gulden C, Mate S, Prokosch HU, Kraus S. "Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping" Stud Health Technol Inform 2018; 253:3-7. DOI: 10.3233/978-1-61499-896-9-3.
  To the publication 
• Haarbrandt B et al. (2018): "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine. 57, e66–e81, 2018.  
  To the publication
• Haarbrandt B, Schreiweis B, Rey S, Sax U, Scheithauer S, Rienhoff O, Knaup-Gregori P, Bavendiek U, Dieterich C, Brors B, Kraus I, Thoms CM, Jäger D, Ellenrieder V, Bergh B, Yahyapour R, Eils R, Consortium HiGHmed, Marschollek M (2018): "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.  
  To the publication
• Hahn U, Matthies F, Lohr C, Löffler M, 3000PA-Towards a National Reference Corpus of German Clinical Language, Stud Health Technol Inform. 2018;247:26-30., DOI: 10.3233/978-1-61499-852-5-26
• Haux R  (2018): "Health Information Systems – from Present to Future? The German Medical Informatics Initiative." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.   
  To the publication
• Hinderer M, Boerries M, Boeker M, Neumaier M, Loubal FP, Acker T, Brunner M, Prokosch HU, Christoph J.; Implementing Pharmacogenomic Clinical Decision Support into German Hospitals.; Stud Health Technol Inform. 2018;247:870-874. Doi: 10.3233/978-1-61499-852-5-870
• Kadioglu D, Breil B, Knell C, Lablans M, Mate S, Schlue D, Serve H, Storf H,  Ückert F,  Wagner T, Weingardt P, Prokosch HU. "Samply.MDR – A Metadata Repository and Its Application in Various Research Networks" Stud Health Technol Inform 2018; 253:50-54. DOI: 10.3233/978-1-61499-896-9-50.
  To the publication 
• Karim Md R, Nguyen B-Ph, Zimmermann L, Kirsten T, Löbe M, Meineke F A, Stenzhorn H, Kohlbacher O, Decker S, Beyan O D (2018). A Distributed Analytics Platform to Execute FHIR-based Phenotyping Algorithms.Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences – SWAT4LS 2018, Antwerp, Belgium, 3–6 December 2018. CEUR Workshop Proceedings Vol. 2275. ISSN: 1613-0073
• Kesselmeier M, Scherag A, Commentary: Arguing for Adaptive Clinical Trials in Sepsis, Front Immunol. 2018; 9:2507. DOI: 10.3389/fimmu.2018.02507
  To the publication
• Knaup P, Deserno T, Prokosch HU, Sax U (2018). "Implementation of a National Framework to Promote Health Data Sharing. The German Medical Informatics Initiative." Yearbook of Medical Informatics, Georg Thieme Verlag KG Stuttgart. 27, 1, p. 302–304, 2018     
  To the publication
• Lenz S, Zöller D, Hess M, Binder H; Architectures for distributed privacy-preserving deep learning; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 63. Jahrestagung der GMDS, Osnabrück, 02.-06.09.2018. Düsseldorf: German Medical Science GMS Publishing House; 2018. DocAbstr. 207, DOI: 10.3205/18gmds097
  To the publication
• Maier C, Lang L, Storf H, Vormstein P, Bieber R, Bernarding J, Herrmann T, Haverkamp C, Horki P, Laufer J, Berger F, Höning G, Fritsch HW, Schüttler J, Ganslandt T, Prokosch HU, Sedlmayr M. "Towards Implementation of OMOP in a German University Hospital Consortium" Appl Clin Inform 2018; 9:54-61. DOI: 10.1055/s-0037-1617452 .
  To the publication 
• Parciak M, et al. (2018): " PROV@TOS, a Java Wrapper To Capture Provenance for Talend Open Studio Jobs."  presented at the 63. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 2018             
  To the publication
• Prasser F, Kohlbacher O, Mansmann U, Bauer B, Kuhn K (2018). "Data Integration for Future Medicine (DIFUTURE). An Architectural and Methodological Overview." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.      
  To the publication
• Prokosch HU, Acker T, Bernarding J, Binder H, Boeker M, Boerries M, Daumke P, Ganslandt T, Hesser J, Höning G, Neumaier M, Marquardt K, Renz H, Rothkötter HJ, Schade-Brittinger C Schmücker P, Schüttler J, Sedlmayr M, Serve H, Sohrabi K, Storf H (2018). "MIRACUM: Medical Informatics in Research and Care in University Medicine. A Large Data Sharing Network to Enhance Translational Research and Medical Care." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.       
  To the publication
• Richter-Pechanski P, Riezler S, Dieterich C (2018): " De-Identification of German Medical Admission Notes." Studies in Health Technology and Informatics. 253: p. 165-169, 2018
  To the publication
• Scherag A. 2018. p. 3-8. "Big Data" und personalisierte Medizin in der Intensivmedizin. DIVI Jahrbuch 2018/2019.
• Schreiweis B, Bronsch T, Merzweiler A, Bergh B (2018): "Implementing Modular Research Consents Using IHE Advanced Patient Privacy Consents." Studies in Health Technology and Informatics, p. 840–844, 2018.
  To the publication
• Sedlmayr M, Prokosch HU. "Datenaustausch in der Forschung via OMOP/OHDSI" EHEALTHCOM 4/18, COMPLEX|Medizininformatik 34-37, Juni 2018.
• Semler SC, Wissing F, Heyder R (2018). "German Medical Informatics Initiative. A National Approach to Integrating Health Data from Patient Care and Medical Research." Methods of Information in Medicine. 57(S 01): e50–e56, 2018          
  To the publication 
• Treppner M, Lenz S, Binder H, Zöller D; Modeling Activity Tracker Data Using Deep Boltzmann Machines; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-155
• Winter A, Stäubert S, Ammon D, Aiche S, Beyan O, Bischoff V, Daumke P, Decker S, Funkat G, Gewehr J, de Greiff A, Haferkamp S, Hahn U, Henkel A, Kirsten T, Klöss T, Lippert J, Löbe M, Lowitsch V, Maassen O, Maschmann J, Meister S, Mikolajczyk R, Nüchter M, Pletz M, Rahm E, Riedel M, Saleh K, Schuppert A, Smers S, Stollenwerk A, Uhlig S, Wendt T, Zenker S, Fleig W, Marx G, Scherag A, Löffler M (2018): "Smart Medical Information Technology for Healthcare (SMITH). Data Integration based on Interoperability Standards." Methods of Information in Medicine,  57(S 01), Georg Thieme Verlag KG Stuttgart. 
  To the publication
• Wulff A, Haarbrandt B, Marschollek M (2018): “Clinical Knowledge Governance Framework for Nationwide Data Infrastructure Projects." Studies in Health Technology and Informatics. 248, p. 196-203, 2018
  To the publication

2017:

• Christoph J, Knell C, Bosserhoff A, Naschberger E, Stürzl M, Rübner M, Seuss H, Ruh M, Prokosch HU, Sedlmayr B. "Usability and Suitability of the Omics-Integrating Analysis Platform tranSMART for Translational Research and Education" ACI 2017; 8:1173-1183. DOI: 10.4338/ACI-2017-05-RA-0085.
  To the publication 
• Christoph J, Knell C, Naschberger E, Stürzl M, Maier C, Prokosch HU, Sedlmayr M. "Two Years of tranSMART in a University Hospital for Translational Research and Education" Stud Health Technol Inform. 2017 ;236:70-79. DOI: 10.3233/978-1-61499-759-7-70.
  To the publication 
• Hinderer M, Boeker M, Wagner SA, Lablans M, Newe S, Hülsemann JL, Neumaier M, Binder H, Renz H, Acker T, Prokosch HU, Sedlmayr M.; Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development.; BMC Med Inform Decis Mak. 2017 Jun 6;17(1):81. doi: 10.1186/s12911-017-0480-y. PMID: 28587608.
• Hinderer M, Boerries M, Haller F, Wagner S, Sollfrank S, Acker T, Prokosch HU, Christoph J.; Supporting Molecular Tumor Boards in Molecular-guided Decision-making - the Current Status of Five German University Hospitals.; Stud Health Technol Inform. 2017;236:48-54. doi: 10.3233/978-1-61499-759-7-48. PMID: 28508778.
• Knell C, Sedlmayr M, Christoph J. "Developing Interactive Plug-ins for tranSMART Using the SmartR Framework: The Case of Survival Analysis" Stud Health Technol Inform. 2017; 236:375-382. DOI: 10.3233/978-1-61499-759-7-375.
  To the publication 
• Prabhune, A, Stotzka, Gertz, M., Hesser, J. "Managing Provenance for Medical Datasets An Example Case for Documenting the Workflow for Image Processing" HEALTHINF 2017:236-243. DOI: 10.5220/0006109402360243.
  To the publication