Scientific publications that are created in the context of the Medical Informatics Initiative are listed here.

2024:

  • Albashiti, F., Thasler, R., Wendt, T. et al. Die Datenintegrationszentren – Von der Konzeption in der Medizininformatik-Initiative zur lokalen Umsetzung in einem Netzwerk Universitätsmedizin. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03879-5 
    Zur Publikation
  • Cheng KY, Pazmino S, Bergh B, Lange-Hegermann M, Schreiweis B. An Image Retrieval Pipeline in a Medical Data Integration Center. Stud Health Technol Inform. 2024 Jan 25;310:1388-1389. doi: 10.3233/SHTI231208. PMID: 38269660.
  • Cheng KY, Pazmino S, Qian H, Bergh B, Schreiweis B. Structured Data Retrieval and Analysis of HL7 v2 Messages with Elasticsearch. Stud Health Technol Inform. 2024 Jan 25;310:1464-1465. doi: 10.3233/SHTI231246. PMID: 38269698.
  • Kirsten, T., Kleinert, P., Gebhardt, M. et al. Grundlagen für die wissenschaftliche Nutzung umfangreicher Versorgungsdaten in Deutschland – Ergebnisse der AG Data Sharing der Medizininformatik-Initiative. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03880-y  
    Zur Publikation
  • Loeffler, M., Maas, R., Neumann, D. et al. INTERPOLAR – prospektive, interventionelle Studien im Rahmen der Medizininformatik-Initiative zur Verbesserung der Arzneimitteltherapiesicherheit in der Krankenversorgung. Bundesgesundheitsbl (2024). doi: 10.1007/s00103-024-03890-w 
    Zur Publikation
  • Ulrich H, Anywar M, Kinast B, Schreiweis B. Large-Scale Standardized Image Integration for Secondary Use Research Projects. Stud Health Technol Inform. 2024 Jan 25;310:174-178. doi: 10.3233/SHTI230950. PMID: 38269788.
  • Zenker S, Strech D, Jahns R, Müller G, Prasser F, Schickhardt C, Schmidt G, Semler SC, Winkler E, Drepper J. National standardisierter Broad Consent in der Praxis: erste Erfahrungen, aktuelle Entwicklungen und kritische Betrachtungen [Nationally standardized broad consent in practice: initial experiences, current developments, and critical assessment]. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2024 Apr 19. German. doi: 10.1007/s00103-024-03878-6. Epub ahead of print. PMID: 38639817. 

2023:

  • Henke E, Zoch M, Reinecke I, Spoden M, Ruhnke T, Günster C, Sedlmayr M, Bathelt F (2023): "German Claims Data for Real-World Research: Content Coverage Evaluation in OMOP CDM". Stud Health Technol Inform. 2023 May 18;302:3-7. doi: 10.3233/SHTI230053. PMID: 37203598.
    Zur Publikation
  • Intemann T, Kaulke K, Kipker D-K, Lettieri V, Stallmann C, Schmidt CO, Geidel L, Bialke M, Hampf C, Stahl D, Lablans M, Franke M, Kraywinkel KP, Kieschke J, Bartholomäus S, Näher A-F, Tremper G, Lambarki M, March S, Prasser F, Haber AC, Drepper J, Schlünder I, Kirsten T, Pigeot I, Sax U, Buchner B, Ahrens W, Semler SC: White Paper - Verbesserung des Record Linkage für die Gesundheitsforschung in Deutschland (DOI: 10.4126/FRL01-006461895)
    Zur Publikation 
  • Prokosch H.U., Gebhardt M., Gruendner J., Kleinert P., Buckow K., Rosenau R., Semler S.C (2023).  Towards a National Portal for Medical Research Data (FDPG): Vision, Status, and Lessons Learned. Stud Health Technol Inform. 2023; 18;302:307-311. doi: 10.3233/SHTI230124.  PMID: 37203668.
  • Prokosch H.U., Gruendner J., Gebhardt M., Buckow K., Kleinert P., Semler S.C. (2023). Das Forschungsdatenportal für Gesundheit: Zugang zu Real World Routinedaten der deutschen Universitätskliniken. gesundhyte.de Dec 2023. 15: 15-19.
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  • Schüttler C, Zerlik M, Gruendner J, Köhler T, Rosenau L, Prokosch H, Sedlmayr B: "Empowering Researchers to Query Medical Data and Biospecimens by Ensuring Appropriate Usability of a Feasibility Tool: Evaluation Study". JMIR Hum Factors 2023;10:e43782. doi: 10.2196/43782 PMID: 37074765
    Zur Publikation

2022:

  • Prokosch H.U., Baber R., Bollmann P., Gebhardt M., Gruendner J., Hummel M. Aligning Biobanks and Data Integration Centers Efficiently (ABIDE_MI). Stud Health Technol Inform. May 2022 16;292:37-42. doi: 10.3233/SHTI220317. PMID: 35575846.
  • Riederer I, Mühlau M, Wiestler B et al (2022): „Structured Reporting in Multiple Sclerosis – Consensus-Based Reporting Templates for Magnetic Resonance Imaging of the Brain and Spinal Cord.“ Fortschr Röntgenstr 2022; DOI: 10.1055/a-1867-3942
    Zur Publikation
  • Roschka S, Leddig T, Bullerjahn M, Richter G, Liedtke W, Langanke M, Hoffmann W (2022): "Secondary use of health care data and left‑over biosamples within the ‘Medical Informatics Initiative’ (MII): a quasi‑randomized controlled evaluation of patient perceptions and preferences regarding the consent process." BMC Medical Informatics and Decision Making. 184: p. 1-9.
    DOI: 10.1186/s12911-022-01922-6.
    Zur Publikation
  • Scherag, A., Andrikyan, W., Dreischulte, T. et al. POLAR – „POLypharmazie, Arzneimittelwechselwirkungen und Risiken“ – wie können Daten aus der stationären Krankenversorgung zur Beurteilung beitragen?. Präv Gesundheitsf (2022)
    Zur Publikation
  • Zenker S, Strech D, Ihrig K, Jahns R, Müller G, Schickhardt C, Schmidt G, Speer R, Winkler E, von Kielmansegg SG, Drepper J (2022): "Data protection-compliant broad consent for secondary use of health care data and human biosamples for (bio)medical research: Towards a new German national standard." Journal of Biomedical Informatics, 131 (2022), 104096.
    Zur Publikation

2021:

  • Anywar M, Pazmino S, Cheng K Y, Petersen N, Qian H, Rottmann F, Richter T, Bronsch T, Bergh B, Schreiweis B: "Mapping HL7v2 ORU and BAR Messages to openEHR Archetypes." 66. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 12. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e. V. (TMF), 2021. doi: 10.3205/21gmds025.
    Zur Publikation
  • Baumgartl T, Petzold M, Wunderlich M, Hohn M, Archambault D, Lieser M, et al (2021): "In Search of Patient Zero: Visual Analytics of Pathogen Transmission Parthways in Hospitals." IEEE Transactions on Visualization and Computer Graphics (TVCG), 27 (2): p. 711-721, 2021.
    Zur Publikation
  • Caliskan D, Zierk J, Kraska D, Schulz S, Daumke P, Prokosch HU, Kapsner LA: "First Steps to Evaluate an NLP Tool’s Medication Extraction Accuracy from Discharge Letters." Stud Health Technol Inform 2021; 278: p. 224-230. DOI: 10.3233/SHTI210073.
    Zur Publikation
  • Gruendner J, Gulden C, Kampf MO, Mate S, Prokosch HU, Zierck J: "A Framework for Criteria-Based Selection and Processing of Fast Healthcare Interoperability Resources (FHIR) Data for Statistical Analysis: Design and Implementation Study." JMIR Med Inform 2021: 9 (4) : e25645. DOI: 10.2196/25645.
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  • Gulden C, Blasini R, Nassirian A, Stein A, Altun F, Kirchner M, Prokosch HU, Boeker M (2021): "Prototypical Clinical Trial Registry Based on Fast Healthcare Interoperability Resources (FHIR): Design and Implementation Study." JMIR Med Inform 2021; 9:e20470. DOI: 10.2196/20470.
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  • Hampf C, Bialke M, Geidel L, Vass A, Bahls T, Blasini R, Blumentritt A, Boeker M, Bruns C, Jandrig B, Fünfgeld M, Heinrich P, Leddig T, Michel-Backofen A, Pirkl A, Rautenberg M, Simons F, Stahl D, Prokosch HU, Hoffmann W (2021): “A survey on the current status and future perspective of informed consent management in the MIRACUM consortium of the German Medical Informatics Initiative.” BMC Translational Medicine Communications, 2021; 6:7. DOI: 10.1186/s41231-021-00086-1.
    Zur Publikation
  • Hund H, Wettstein R, Heidt CM, Fegeler C (2021): "Executing Distributed Healthcare and Research Processes - The HiGHmed Data Sharing Framework." Studies in Health Technology and Informatics, 278: p. 126-133, 2021.
    Zur Publikation  
  • Kapsner LA, Kampf MO, Seuchter SA, Gruendner J, Gulden C, Mate S, Mang JM, Schüttler C, Deppenwiese N, Krause L, Zöller D, Balig J, Fuchs T, Fischer P, Haverkamp C, Holderried M, Mayer G, Stenzhorn H, Stolnicu A, Storck M, Storf H, Zohner J, Kohlbacher O, Strzelczyk A, Schüttler J, Acker T, Boeker M, Kaisers UX, Kestler HA and Prokosch H-U (2021): "Reduced Rate of Inpatient Hospital Admissions in 18 German University Hospitals During the COVID-19 Lockdown." Front. Public Health 8:594117. DOI: 10.3389/fpubh.2020.594117
    Zur Publikation
  • Kapsner LA, Mang JM, Mate S, Seuchter SA, Vengadeswaran A, Bathelt F, Deppenwiese N, Kadioglu D, Kraska D, Prokosch HU: "Linking a Consortium-Wide Data Quality Assessment Tool with the MIRACUM Metadata Repository." Appl Clin Inform 2021; 12: p. 826-835. DOI: 10.1055/s-0041-1733847.
    Zur Publikation
  • Kapsner LA, Zavgorodnij MG, Majorova SP, Hotz‐Wagenblatt A, Kolychev OV, Lebedev IN, Hoheisel JD, Hartmann A, Bauer A, Mate S, Prokosch H, Haller F, and Moskalev EA: "BiasCorrector: fast and accurate correction of all types of experimental biases in quantitative DNA methylation data derived by different technologies." Int. J. Cancer 2021: p. 1150-1165. ijc.33681. DOI: 10.1002/ijc.33681.
    Zur Publikation
  • Kinast, B, Lutz, M, Schreiweis, B: "Telemonitoring of Real-World Health Data in Cardiology: A Systematic Review." Int. J. Environ. Res. Public Health 2021, 18, 9070. doi: 10.3390/ijerph18179070
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  • Kindermann A, Tute E, Benda S, et al (2021): "Preliminary Analysis of Structured Reporting in the HiGHmed Use Case Cardiology: Challenges and Measures." Studies in Health Technology and Informatics. 278: p. 187-194, 2021.
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  • Klann JG, Weber GM, Estiri H, Moal B, Avillach P, Hong C, Castro V, Maulhardt T, Tan ALM, Geva A, Beaulieu-Jones BK, Malovini A, South AM, Visweswaran S, Omenn GS, Ngiam KY, Mandl KD, Boeker M, Olson KL, Mowery DL, Morris M, Follett RW, Hanauer DA, Bellazzi R, Moore JH, Loh NW, Bell DS, Wagholikar KB, Chiovato L, Tibollo V, Rieg S, Li ALLJ, Jouhet V, Schriver E, Samayamuthu MJ, Xia Z, Hutch M, Luo Y, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE) (CONSORTIA AUTHOR), Kohane IS, Brat GA, Murphy SN (2021): "Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data", Journal of the American Medical Informatics Association, 2021, ocab018.  DOI: 10.1093/jamia/ocab018.
    Zur Publikation 
  • Kock-Schoppenhauer AK, Schreiweis B, Ulrich H, Reimer N, Wiedekopf J, Kinast B, Busch H, Bergh B, Ingenerf J (2021). "Medical Data Engineering – Theory and Practice." In Bellatreche L., Chernishev G., Corral A., Ouchani S., Vain J. (eds) Advances in Model and Data Engineering in the Digitalizaton Era. MEDI 2021. Communications in Computer and Information Science, vol. 1481. Springer, Cham. p. 269-284.
    doi: 10.1007/978-3-030-87657-9_21
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  • Lenz S, Hess M, Binder H: "Deep generative models in DataSHIELD." BMC Med Res Methodol 2021: 21: 64. DOI: 10.1186/s12874-021-01237-6.
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  • Maier C,  Kapsner LA, Mate S, Prokosch HU, Kraus S: "Patient Cohort Identification on Time Series Data Using the OMOP Common Data Model."Appl Clin Inform 2021; 12: p. 057-064. DOI: 10.1055/s-0040-1721481.
    Zur Publikation
  • Mate S, Seuchter SA, Ehrenberg K, Deppenwiese N, Zierk J, Prokosch HU, Kraska D, Kapsner LA: "A Multi-User Terminology Mapping Toolbox." Stud Health Technol Inform 2021: p. 278:217-223. DOI: 10.3233/SHTI210072.
    Zur Publikation
  • Melzer G, Maiwald T, Prokosch HU, Ganslandt T (2021): "Leveraging Real-World Data for the Selection of Relevant Eligibility Criteria for the Implementation of Electronic Recruitment Support in Clinical Trials."
    Appl Clin Inform 2021; 12:017-026. DOI: 10.1055/s-0040-1721010. 
    Zur Publikation
  • Reimer N, Unberath P, Busch H, Börries M, Metzger P, Ustjanzew A, Renner C, Prokosch HU, Christoph J: "Challenges and Experiences Extending the cBioPortal for Cancer Genomics to a Molecular Tumor Board Platform." Stud Health Technol Inform 2021;287: p. 139-143. DOI: 10.3233/SHTI210833.
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  • Reimer N, Unberath P, Busch H, Ingenerf J: "FhirSpark – Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics." Stud Health Technol Inform 2021; 281: p. 303-307.
    DOI: 10.3233/SHTI210169
    Zur Publikation
  • Reinecke I, Zoch M, Reich C, Sedlmayr M, Bathelt F: "The usage of OHDSI OMOP – A Scoping Review." Stud Health Technol Inform 2021: p. 283:95-103. DOI: 10.3233/SHTI210546.
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  • Rinaldi E and Thun S (2021): "From OpenEHR to FHIR and OMOP Data Model for Microbiology Findings." Stud Health Technol Inform. 281: p. 402-406, 2021.
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  • Rinaldi E, Saas J and Thun S (2021): "Use of LOINC and SNOMED CT with FHIR for Microbiology Data." Stud Health Technol Inform. 278: p. 156-162, 2021. 
    Zur Publikation
  • Sass J, Zabka S, Essenwanger A, Schepers J, Boeker M, Thun S: "Fast Healthcare Interoperability Resources (FHIR®) Representation of Medication Data Derived from German Procedure Classification Codes (OPS) Using Identification of Medicinal Products (IDMP) Compliant Terminology." Stud Health Technol Inform 2021; 278: p. 231-236. DOI: 10.3233/SHTI210074.
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  • Schaaf J, Sedlmayr M, Prokosch HU, Tegtbauer N, Kadioglu D, Schaefer J, Boeker M, Storf H: "Visualization of Similar Patients in a Clinical Decision Support System for Rare Diseases – A Focus Group Study." Stud Health Technol Inform 2021; 278: p. 49-57. DOI: 10.3233/SHTI210050.
    Zur Publikation
  • Schaaf, J., Sedlmayr, M., Sedlmayr, B. et al. Evaluation of a clinical decision support system for rare diseases: a qualitative study. BMC Med Inform Decis Mak 2165 (2021).
    DOI: 10.1186/s12911-021-01435-8
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  • Schüttler C, Prokosch HU, Sedlmayr M, Sedlmayr B: "Evaluation of Three Feasibility Tools for Identifying Patient Data and Biospecimen Availability: Comparative Usability Study." JMIR Med Inform 2021;9(7):e25531, DOI: 10.2196/25531.
    Zur Publikation
  • Schüttler J, Mang JM, Kapsner LA, Seuchter SA, Binder H, Zöller D et al (2021): "Letalität von Patienten mit COVID-19: Untersuchungen zu Ursachen und Dynamik an deutschen Universitätsklinika." Anästh. Intensivmed 2021; 62: p. 244–257. DOI: 10.19224/ai2021.244
  • Sedlmayr B, Sedlmayr M, Kroll B, Prokosch HU, Gründner J , Schüttler C. Improving collaborative COVID-19 research of University Hospitals in Germany: Formative usability evaluation of the CODEX-Feasibility Portal. Accepted for Publication in Applied Clinical Informatics.
  • Walther T, Farin E, Boeker M, Prokosch HU, Binder B, Praus F, Ploner N, Fichtner UA, Horki P, Haeuslschmid R, Seuchter S, Gratzke C, Schoenthaler M: "RECUR – Aufbau eines automatisierten digitalen Registers für Patient*innen mit rezidivierenden Steinen des oberen Harntraktes." Gesundheitswesen 2021; 83: p. 27-S32. DOI: 10.1055/a-1651-0311.
    Zur Publikation
  • Wettstein R, Hund H, Kobylinski I,  Fegeler C and Heinze  O (2021): "Feasibility Queries in Distributed Architectures - Concept and Implementation in HiGHmed." Studies in Health Technology and Informatics, 278: p. 134-141, 2021.
    Zur Publikation 
  • Zoch M, Gierschner C, Peng Y, Gruhl M, Leutner LA, Sedlmayr M, Bathelt F: "Adaption of the OMOP CDM for Rare Diseases." Stud Health Technol Inform 2021; 281: p. 138-142. DOI: 10.3233/SHTI210136.
    Zur Publikation

2020:

  • Becker L, Ganslandt T, Prokosch HU, Newe A (2020): "Applied Practice and Possible Leverage Points for Information Technology Support for Patient Screening in Clinical Trials: Qualitative Study". JMIR Med Inform.
    Zur Publikation
  • Bild R, Bialke M, Buckow K, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Roschka S, Schreiweis B, Stäubert S, Zenker S, Prasser F (2020): "Towards a comprehensive and interoperable representation of consent-based data usage permissions in the German medical informatics initiative". BMC Medical Informatics and Decision Making, 2020, 20:103.
    Zur Publikation
  • Brat GA, Weber GM, Gehlenborg N et al. (2020): "International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.". npj Digi. Med 3, 109 (2020)
    Zur Publikation
  • Gruendner J, Wolf N, Tögel L, Haller F, Prokosch HU, Christoph J. (2020) Integrating Genomics and Clinical Data for Statistical Analysis by Using GEnome MINIng (GEMINI) and Fast Healthcare Interoperability Resources (FHIR): System Design and Implementation; JMIR 2020;22:e19879.
    Zur Publikation
  • Gruhl M, Reinecke I, Sedlmayr M.(2020). "Specification and Distribution of Vocabularies Among Consortial Partners" Stud Health Technol Inform 2020;270:1393-1394
    Zur Publikation
  • Jaravine V, Balmford J, Metzger P, Boerries M, Binder H, Boeker M (2020): "Annotation of Human Exome Gene Variants with Consensus Pathogenicity" Genes 11 (9), 1076.     
    Zur Publikation
  • Lenz S, Hess M, Binder H, Unsupervised deep learning on biomedical data with BoltzmannMachines.jl; doi.org/10.1101/578252
    Zur Publikation
  • Müller M, Petzold M, Wunderlich M, Baumgartl T, Höhn M, Eichel V, ... and von Landesberger T (2020): "Visual analysis for hospital infection control using a RNN model." EuroVis Work. Vis. Ana. (EuroVA). The Eurographics Association, 2020.
    Zur Publikation
  • Ploner N, Prokosch HU. (2020)Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:158-162.
    Zur Publikation 
  • Pugliese P, Knell C, Christoph J (2020) Exchange of Clinical and Omics Data According to FAIR Principles: A Review of Open Source Solutions; Methods Inf Med. 2020;59(S 01):e13-e20
    Zur Publikation 
  • Rau H, Geidel L, Bialke M, Blumentritt A, Langanke M, Liedtke W, Pasewald S, Stahl D, Bahls T, Maier C, Prokosch HU, Hoffmann W.(2020) The generic Informed Consent Service gICS®: implementation and benefits of a modular consent software tool to master the challenge of electronic consent management in research; J Transl Med 18, 287 (2020).
    Zur Publikation 
  • Reinecke I, Gulden C, Kümmel M, Nassirian A, Blasini R, Sedlmayr M.(2020) Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:1393-1394
    Zur Publikation
  • Schaaf J, Prokosch HU,  Boeker M, Schaefer J, Vasseur J, Storf H, Sedlmayr M. (2020) Interviews with experts in rare diseases for the development of clinical decision support system software - a qualitative study; BMC Med Inform Decis Mak 20, 230     
    Zur Publikation 
  • Schaaf J, Sedlmayr M, Prokosch HU, Ganslandt T, Schade-Brittinger C, von Wagner M, Kadioglu D, Schubert K, Lee-Kirsch MA, K. Kraemer BK, Winner B, Mueller T,  Schaefer JR, Wagner TOF, Bruckner-Tuderman L, Tuescher O, Boeker M, Storf H.(2020) The Status Quo of Rare Diseases Centres for the Development of a Clinical Decision Support System – A Cross-Sectional Study; Stud Health Technol Inform 2020;271:176-183
    Zur Publikation 
  • Wettstein R, Merzweiler A, Klass M and Heinze O. (2020): "Using openEHR in XDS.b Environments – Opportunities and Challenges." Studies in Health Technology and Informatics, 272, p. 300, 2020. 
    Zur Publikation 
  • Wulff A, Ballout S, Gietzelt M, Marschollek M, Scheithauer S, and the HiGHmed infection control study group (2020): “A Report on Data Modelling for Infection Control in HiGHmed." Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020.
    Zur Publikation
  • Zabka S, Schulz S, Brunner O, Boeker M. "How versioning of terminology systems can be supported by ontological models – a case study on TNM tumor classification." Applied Ontology, vol. 15, no. 1, pp. 41-60, 2020.  DOI: 10.3233/AO-190220.  
    Zur Publikation 
  • Zierk J, Arzideh F, Kapsner LA, Prokosch HU, Metzler M, Rauh M. "Reference Interval Estimation from Mixed Distributions using Truncation Points and the Kolmogorov-Smirnov Distance (kosmic)." Sci Rep. 2020, 10, 1704. DOI: 10.1038/s41598-020-58749-2.
    Zur Publikation
  • Zierk J, Krebs A, Rauh M, Metzler M, Löscher A, Strasser E, Krause SW. "Blood counts in adult and elderly individuals: defining the norms over eight decades of life." Br J Haematol. DOI: 10.1111/bjh.16430.
    Zur Publikation 
  • Buechner P, Hinderer M, Unberath P, Metzger P, Boeker M, Acker T, Haller F, Mack E, Nowak D, Paret C, Schanze D, von Bubnoff N, Wagner S, Busch H, Boerries M, Christoph J. "Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal." Diagnostics 2020, 10, 93. DOI:10.3390/diagnostics10020093. 
    Zur Publikation
  • Fuchs M, Kreutzer FP, Kapsner L.A, Mitzka S, Just A, Perbellini F, Terracciano CM, Xiao K, Geffers R, Bogdan C, Prokosch, HU, Fiedler J, Thum T, Kunz M. (2020). "Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies." Int. J. Mol. Sci. 2020, 21, 4727
    Zur Publikation 
  • Zacher B, Haller S, Kramer R and Eckmanns T (2020): "A machine learning framework for outbreak detection in infectious disease surveillance systems [poster]." Conference on Digital ID2020 Digitalization and Infectious Diseases, 2020. 

2019:

  • Aguduri L S, Merzweiler A, Yüksekogul N, Meyer N, Brandner A und Heinze O (2019): "Modeling Clinical Data Transformation for a Medical Data Integration Center: An openEHR Approach." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 2019.
    Zur Publikation 
  • Ammon D, Bietenbeck A, Boeker M, Ganslandt T, Heckmann S, Heitmann K, Sax U, Schepers J, Semler SC, Thun S, Zautke A (2019): "Der Kerndatensatz der Medizininformatik-Initiative – Interoperable Spezifikation am Beispiel der Laborbefunde mittels LOINC und FHIR." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 113-117.
  • Beier K, Schweda M, Schicktanz S (2019): "Taking patient involvement seriously: a critical ethical analysis of participatory approaches in data-intensive medical research". BMC Medical Informatics and Decision Making. 19: p. 90, 2019
    Zur Publikation
  • Bott OJ, Semler SC (2019): "Editorial." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 95.
  • Buckow K, Ammon D, Bild R, Boeker M, Ganslandt T, Haarbrandt B, Haferkamp S, Sax U, Schepers J, Schreiweis B, Stenzhorn H (2019): »Interoperabilität – Konvergenz unterschiedlicher Informationsmodelle.« mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 110-112.
  • Gruendner J, Prokosch HU, Schindler S, Lenz S, Binder H (2019): "A Queue-Poll Extension and DataSHIELD: Standardised, Monitored, Indirect and Secure Access to Sensitive Data." Stud Health Technol Inform. 258: 115-119. 
    Zur Publikation
  • Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D. KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services. PLoS ONE 14(10): e0223010.  
    Zur Publikation
  • Gulden C, Kirchner M, Schüttler C, Hinderer M, Kampf M, Prokosch HUP, Toddenroth D (2019): "Extractive summarization of clinical trial descriptions." Int J Med Inform. 2019;129:114-121.   
    Zur Publikation
  • Gulden C, Landerer I, Nassirian A, Altun FB, Andrae J (2019). "Extraction and Prevalence of Structured Data Elements in Free-Text Clinical Trial Eligibility Criteria." Stud Health Technol Inform. 258: 226-230. PubMed PMID: 30942751. 
    Zur Publikation
  • Gulden C, Mate S, Prokosch HU, Kraus S; Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-3 
    Zur Publikation 
  • Hampf C, Bahls T, Hund H, Drepper J, Lablans M, Speer R (2019): "Record Linkage: Optionen für standortübergreifende Datenzusammenführungen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 117-121. 
  • Hasselblatt H, Andrae J, Tassoni A, Fitzer K, Bahls T, Prokosch HU, Boeker M (2019): "Establishing an Interoperable Clinical Trial Information System Within MIRACUM." Stud Health Technol Inform. 258: 216-220. 
    Zur Publikation 
  • Hemmer B, Börries M, Christoph J, Marx G, Maaßen O, Schuppert A, Scheithauer S (2019): "Die klinischen Anwendungsbeispiele (Use Cases) der vier MII-Konsortien." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 98-102. 
  • Kampf MO, Kraska D, Prokosch HU (2019): "An Analysis of Erlangen University Hospital’s Billing Data on Utility-Based De-Identification." Stud Health Technol Inform. 258: 70-74.        
    Zur Publikation
  • Kapsner LA, Kampf MO, Seuchter SA, Kamdje-Wabo G, Gradinger T, Ganslandt T, Mate S, Guendner J, Kraska D, Prokosch HU. Moving Towards an EHR Data Quality Framework: The MIRACUM Approach. Stud Health Technol Inform. 2019;267: p.247-253.   
    Zur Publikation
  • Kindermann A, Stepanova E, Hund H, Geis N, Malone B and Dieterich C (2019): "MedEx - Data Analytics for Medical Domain Experts in Real-Time." Studies in Health Technology and Informatics.
    267: p. 142-149, 2019.
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  • Mate S, Bürkle T, Kapsner LA, Toddenroth D, Kampf M, Sedlmayr M, Castellanos I, Prokosch HU, Kraus S.A Method for the Graphical Modeling of Relative Temporal Constraints. J Biomed Inform. 2019, 100. doi: 10.1016/j.jbi.2019.103314. 
    Zur Publikation
  • Öfelein M, Reichold M, Maier C, Prokosch HU. Designing a Framework of Components to Support Patient Engagement in Research. Stud Health Technol Inform. 2019;267:20-27.                 
    Zur Publikation 
  • Richter-Pechanski P, Amr A, Katus HA, Dieterich C (2019): " Deep Learning Approaches Outperform Conventional Strategies in De-Identification of German Medical Reports." Studies in Health Technology and Informatics. 267: p. 101-109, 2019
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  • Sargeant A, von Landesberger T, Baier C, Bange F, Dalpke A, Eckmanns T et al. (2019): "Early Detection of Infection Chains & Outbreaks: Use Case Infection Control."
    ICT for Health Science Research, Stud Health Technol Inform. 258: p. 245-246, 2019
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  • Schmücker P, Schemmann U, Winter A, Bott OJ, Knaup-Gregori P, Lautenbacher H, Phan-Vogtmann LA, Scherag A, Sohrabi K, Spreckelsen C (2019): "Aus-, Fort- und Weiterbildung in der Medizininformatik-Initiative." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 102-105.
  • Schneiderheinze H, Prokosch HU, Apel H, Bellut L, Wullich B, Trollmann R, Schüttler C. Development and usability analysis of a multimedia eConsent solution. Stud Health Technol Inform. 2019; 267: 297-303.    
    Zur Publikation 
  • Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T (2019): "Das Datenintegrationszentrum – Ausgangspunkt für die datengetriebene medizinische Forschung und Versorgung." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 106-110.
  • Semler SC (2019): "Die Medizininformatik-Initiative als Impulsgeber für Standardisierung und Datennutzung im deutschen Gesundheitswesen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 96-98.
  • Sommer M, Kirchner M, Gulden C, Egloffstein S, Lux MP, Beckmann MW, Mackensen A, Prokosch HU (2019). "Design and Implementation of a Single Source Multipurpose Hospital-Wide Clinical Trial Registry." Stud Health Technol Inform. 258: 164-168.  
    Zur Publikation
  • Unberath P, Knell C, Prokosch HU, Christoph J (2019). "Developing New Analysis Functions for a Translational Research Platform: Extending the cBioPortal for Cancer Genomics." Stud Health Technol Inform. 258: 46-50.    
    Zur Publikation
  • Vengadeswaran A, Neuhaus P, Hegselmann S, Storf H, Kadioglu D. Semantically annotated Metadata: Interconnecting Samply.MDR and MDM-Portal. Stud Health Technol Inform. 2019;267:86-92.
    Zur Publikation
  • Vey J, Kapsner LA, Fuchs M, Unberath P, Veronesi G, Kunz M. A Toolbox for Functional Analysis and the Systematic Identification of Diagnostic and Prognostic Gene Expression Signatures Combining Meta-Analysis and Machine Learning.  Cancers 2019, 11, 1606; doi:10.3390/cancers11101606.
    Zur Publikation 
  • von Landesberger T, Wunderlich M, Baumgartl T, Höhn M, Marschollek M, Seithauer S (2019): "Visual-Interactive Exploration of Pathogen Outbreaks in Hospitals." EuroVis (Posters): p. 9-11, 2019
    Zur Publikation 
  • Walther D, Paret C, Ritzel C, Büchner P, Unberath P, Maier W, Metzger P, Christoph J, Storf H, Boerries M, Wagner S. "Definition of an annotation pipeline for a molecular tumor board focused on the processing of the result and oncological drugs in terms of usability and approval status." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS). Dortmund, 08.-11.09.2019. Düsseldorf: German Medical Science GMS Publishing House; 2019. DocAbstr. 283. doi: 10.3205/19gmds179
  • Wulff A, Sommer KK, Ballout S, HiGHmed Consortium, Haarbrandt B, Gietzelt M (2019): "A Report on Archetype Modelling in a Nationwide Data Infrastructure Project." Studies in Health Technology and Informatics. 258: p. 146-150, 2019
    Zur Publikation
  • Wunderlich M, Block I, von Landesberger T, Petzold M, Marschollek M, Scheithauer S (2019): "Visual Analysis of Probabilistic Infection Contagion in Hospitals." Vision, Modeling, and Visualization.
    p. 143-150, 2019
    Zur Publikation
  • Yüksekogul N, Meyer N, Aguduri L S, Merzweiler A and Heinze O (2019): "Implementing ETL-processes for a Medical Data Integration Center - First experiences from the Heidelberg University Hospital." Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 2019.
    Zur Publikation
  •  Zabka S, Ammon D, Ganslandt T, Gewehr J, Haverkamp C , Kiefer S, Lautenbacher H, Löbe M, Thun S, Boeker M. "Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP)." Proceedings of the Joint Ontology Workshops 2019, Episode V: The Styrian Autumn of Ontology, Graz, Austria, September 23-25, 2019. Edited by Adrien Barton, Selja Seppälä, Daniele Porello, Vol-2518.
    Zur Publikation 
  • Zacher B, Czogiel (2019): "Supervised learning improves disease outbreak detection." Robert Koch Institute, Department of Infectious Diseases, 2019.
    Zur Publikation 

2018:

  • Ganslandt T, Boeker M, Löbe M, Prasser F, Schepers J, Semler SC, Thun S, Sax U (2018). "Der Kerndatensatz der Medizininformatik-Initiative: Ein Schritt zur Sekundärnutzung von Versorgungsdaten auf nationaler Ebene." Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), Heft 1, März 2018, Jahrgang 20.
    Zur Publikation
  • Gehring S, Eulenfeld R (2018): "German Medical Informatics Initiative: Unlocking Data for Research and Health Care." Methods of Information in Medicine.  57(S 01): e46–e49, 2018
    Zur Publikation
  • Haarbrandt B et al. (2018): "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine. 57, e66–e81, 2018.  
    Zur Publikation
  • Haarbrandt B, Schreiweis B, Rey S, Sax U, Scheithauer S, Rienhoff O, Knaup-Gregori P, Bavendiek U, Dieterich C, Brors B, Kraus I, Thoms CM, Jäger D, Ellenrieder V, Bergh B, Yahyapour R, Eils R, Consortium HiGHmed, Marschollek M (2018): "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.  
    Zur Publikation 
  • Haux R  (2018): "Health Information Systems – from Present to Future? The German Medical Informatics Initiative." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.   
    Zur Publikation
  • Hinderer M, Boerries M, Boeker M, Neumaier M, Loubal FP, Acker T, Brunner M, Prokosch HU, Christoph J.; Implementing Pharmacogenomic Clinical Decision Support into German Hospitals.; Stud Health Technol Inform. 2018;247:870-874. Doi: 10.3233/978-1-61499-852-5-870
  • Knaup P, Deserno T, Prokosch HU, Sax U (2018). "Implementation of a National Framework to Promote Health Data Sharing. The German Medical Informatics Initiative." Yearbook of Medical Informatics, Georg Thieme Verlag KG Stuttgart. 27, 1, p. 302–304, 2018     
    Zur Publikation
  • Lenz S, Zöller D, Hess M, Binder H; Architectures for distributed privacy-preserving deep learning; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 63. Jahrestagung der GMDS, Osnabrück, 02.-06.09.2018. Düsseldorf: German Medical Science GMS Publishing House; 2018. DocAbstr. 207, DOI: 10.3205/18gmds097
    Zur Publikation
  • Parciak M, et al. (2018): " PROV@TOS, a Java Wrapper To Capture Provenance for Talend Open Studio Jobs."  presented at the 63. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 2018             
    Zur Publikation 
  • Prasser F, Kohlbacher O, Mansmann U, Bauer B, Kuhn K (2018). "Data Integration for Future Medicine (DIFUTURE). An Architectural and Methodological Overview." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.      
    Zur Publikation
  • Prokosch HU, Acker T, Bernarding J, Binder H, Boeker M, Boerries M, Daumke P, Ganslandt T, Hesser J, Höning G, Neumaier M, Marquardt K, Renz H, Rothkötter HJ, Schade-Brittinger C Schmücker P, Schüttler J, Sedlmayr M, Serve H, Sohrabi K, Storf H (2018). "MIRACUM: Medical Informatics in Research and Care in University Medicine. A Large Data Sharing Network to Enhance Translational Research and Medical Care." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.       
    Zur Publikation 
  • Richter-Pechanski P, Riezler S, Dieterich C (2018): " De-Identification of German Medical Admission Notes." Studies in Health Technology and Informatics. 253: p. 165-169, 2018
    Zur Publikation
  • Schreiweis B, Bronsch T, Merzweiler A, Bergh B (2018): "Implementing Modular Research Consents Using IHE Advanced Patient Privacy Consents." Studies in Health Technology and Informatics, p. 840–844, 2018.
    Zur Publikation 
  • Semler SC, Wissing F, Heyder R (2018). "German Medical Informatics Initiative. A National Approach to Integrating Health Data from Patient Care and Medical Research." Methods of Information in Medicine. 57(S 01): e50–e56, 2018          
    Zur Publikation  
  • Treppner M, Lenz S, Binder H, Zöller D; Modeling Activity Tracker Data Using Deep Boltzmann Machines; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-155
  • Winter A, Stäubert S, Ammon D, Aiche S, Beyan O, Bischoff V, Daumke P, Decker S, Funkat G, Gewehr J, de Greiff A, Haferkamp S, Hahn U, Henkel A, Kirsten T, Klöss T, Lippert J, Löbe M, Lowitsch V, Maassen O, Maschmann J, Meister S, Mikolajczyk R, Nüchter M, Pletz M, Rahm E, Riedel M, Saleh K, Schuppert A, Smers S, Stollenwerk A, Uhlig S, Wendt T, Zenker S, Fleig W, Marx G, Scherag A, Löffler M (2018): "Smart Medical Information Technology for Healthcare (SMITH). Data Integration based on Interoperability Standards." Methods of Information in Medicine,  57(S 01), Georg Thieme Verlag KG Stuttgart. 
    Zur Publikation
  • Wulff A, Haarbrandt B, Marschollek M (2018): “Clinical Knowledge Governance Framework for Nationwide Data Infrastructure Projects." Studies in Health Technology and Informatics. 248, p. 196-203, 2018
    Zur Publikation

2017:

  • Hinderer M, Boeker M, Wagner SA, Lablans M, Newe S, Hülsemann JL, Neumaier M, Binder H, Renz H, Acker T, Prokosch HU, Sedlmayr M.; Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development.; BMC Med Inform Decis Mak. 2017 Jun 6;17(1):81. doi: 10.1186/s12911-017-0480-y. PMID: 28587608.
  • Hinderer M, Boerries M, Haller F, Wagner S, Sollfrank S, Acker T, Prokosch HU, Christoph J.; Supporting Molecular Tumor Boards in Molecular-guided Decision-making - the Current Status of Five German University Hospitals.; Stud Health Technol Inform. 2017;236:48-54. doi: 10.3233/978-1-61499-759-7-48. PMID: 28508778.

2005:

  • Lenz S, Hackenberg M, Binder H; The JuliaConnectoR: a functionally oriented interface for integrating Julia in R; arXiv:2005.06334
    Zur Publikation