Wissenschaftliche Publikationen, die im Rahmen der Medizininformatik-Initiative entstehen, werden hier aufgeführt.
  • Ammon D, Bietenbeck A, Boeker M, Ganslandt T, Heckmann S, Heitmann K, Sax U, Schepers J, Semler SC, Thun S, Zautke A (2019): "Der Kerndatensatz der Medizininformatik-Initiative – Interoperable Spezifikation am Beispiel der Laborbefunde mittels LOINC und FHIR." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 113-117.
     
  • Becker L, Ganslandt T, Prokosch HU, Newe A. (2020): "Applied Practice and Possible Leverage Points for Information Technology Support for Patient Screening in Clinical Trials: Qualitative Study". JMIR Med Inform.
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  • Bott OJ, Semler SC (2019): "Editorial." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 95.
     
  • Bild R, Bialke M, Buckow K, Ganslandt T, Ihrig K, Jahns R, Merzweiler A, Roschka S, Schreiweis B, Stäubert S, Zenker S, Prasser F (2020): "Towards a comprehensive and interoperable representation of consent-based data usage permissions in the German medical informatics initiative". BMC Medical Informatics and Decision Making, 2020, 20:103.
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  • Brat GA, Weber GM, Gehlenborg N et al. (2020): "International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium.". npj Digi. Med 3, 109 (2020)
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  • Buckow K, Ammon D, Bild R, Boeker M, Ganslandt T, Haarbrandt B, Haferkamp S, Sax U, Schepers J, Schreiweis B, Stenzhorn H (2019): »Interoperabilität – Konvergenz unterschiedlicher Informationsmodelle.« mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 110-112.
     
  • Buechner P, Hinderer M, Unberath P, Metzger P, Boeker M, Acker T, Haller F, Mack E, Nowak D, Paret C, Schanze D, von Bubnoff N, Wagner S, Busch H, Boerries M, Christoph J. "Requirements Analysis and Specification for a Molecular Tumor Board Platform Based on cBioPortal." Diagnostics 2020, 10, 93. DOI:10.3390/diagnostics10020093. 
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  • Fuchs M, Kreutzer FP, Kapsner L.A, Mitzka S, Just A, Perbellini F, Terracciano CM, Xiao K, Geffers R, Bogdan C, Prokosch, HU, Fiedler J, Thum T, Kunz M. (2020). "Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies." Int. J. Mol. Sci. 2020, 21, 4727
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  •   Ganslandt T, Boeker M, Löbe M, Prasser F, Schepers J, Semler SC, Thun S, Sax U (2018). "Der Kerndatensatz der Medizininformatik-Initiative: Ein Schritt zur Sekundärnutzung von Versorgungsdaten auf nationaler Ebene." Forum der Medizin-Dokumentation und Medizin-Informatik (mdi), Heft 1, März 2018, Jahrgang 20.
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  •    Gehring S, Eulenfeld R (2018). "German Medical Informatics Initiative: Unlocking Data for Research and Health Care." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.  
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  •   Gruendner J, Prokosch HU, Schindler S, Lenz S, Binder H (2019). "A Queue-Poll Extension and DataSHIELD: Standardised, Monitored, Indirect and Secure Access to Sensitive Data." Stud Health Technol Inform. 258: 115-119. 
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  •   Gruendner J, Schwachhofer T, Sippl P, Wolf N, Erpenbeck M, Gulden C, Kapsner LA, Zierk J, Mate S, Stürzl M, Croner R, Prokosch HU, Toddenroth D. KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services. PLoS ONE 14(10): e0223010.  
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  •   Gruendner J, Wolf N, Tögel L, Haller F, Prokosch HU, Christoph J. (2020) Integrating Genomics and Clinical Data for Statistical Analysis by Using GEnome MINIng (GEMINI) and Fast Healthcare Interoperability Resources (FHIR): System Design and Implementation; JMIR 2020;22:e19879.
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  • Gruhl M, Reinecke I, Sedlmayr M.(2020). "Specification and Distribution of Vocabularies Among Consortial Partners" Stud Health Technol Inform 2020;270:1393-1394
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  •   Gulden C, Landerer I, Nassirian A, Altun FB, Andrae J (2019). "Extraction and Prevalence of Structured Data Elements in Free-Text Clinical Trial Eligibility Criteria." Stud Health Technol Inform. 258: 226-230. PubMed PMID: 30942751. 
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  •   Gulden C, Kirchner M, Schüttler C, Hinderer M, Kampf M, Prokosch HUP, Toddenroth D.   Extractive summarization of clinical trial descriptions. Int J Med Inform. 2019;129:114-121.   
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  • Gulden C, Mate S, Prokosch HU, Kraus S; Investigating the Capabilities of FHIR Search for Clinical Trial Phenotyping; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-3 
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  •   Haarbrandt B, Schreiweis B, Rey S, Sax U, Scheithauer S, Rienhoff O, Knaup-Gregori P, Bavendiek U, Dieterich C, Brors B, Kraus I, Thoms CM, Jäger D, Ellenrieder V, Bergh B, Yahyapour R, Eils R, Consortium HiGHmed, Marschollek M (2018). "HiGHmed – An Open Platform Approach to Enhance Care and Research across Institutional Boundaries." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.  
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  •   Hampf C, Bahls T, Hund H, Drepper J, Lablans M, Speer R (2019): "Record Linkage: Optionen für standortübergreifende Datenzusammenführungen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 117-121.
     
  •   Hasselblatt H, Andrae J, Tassoni A, Fitzer K, Bahls T, Prokosch HU, Boeker M (2019). "Establishing an Interoperable Clinical Trial Information System Within MIRACUM." Stud Health Technol Inform. 258: 216-220. 
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  •   Haux R  (2018). "Health Information Systems – from Present to Future? The German Medical Informatics Initiative." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.   
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  •   Hemmer B, Börries M, Christoph J, Marx G, Maaßen O, Schuppert A, Scheithauer S (2019): "Die klinischen Anwendungsbeispiele (Use Cases) der vier MII-Konsortien." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 98-102.
     
  • Hinderer M, Boeker M, Wagner SA, Lablans M, Newe S, Hülsemann JL, Neumaier M, Binder H, Renz H, Acker T, Prokosch HU, Sedlmayr M.; Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development.; BMC Med Inform Decis Mak. 2017 Jun 6;17(1):81. doi: 10.1186/s12911-017-0480-y. PMID: 28587608.
     
  • Hinderer M, Boerries M, Boeker M, Neumaier M, Loubal FP, Acker T, Brunner M, Prokosch HU, Christoph J.; Implementing Pharmacogenomic Clinical Decision Support into German Hospitals.; Stud Health Technol Inform. 2018;247:870-874. Doi: 10.3233/978-1-61499-852-5-870
     
  • Hinderer M, Boerries M, Haller F, Wagner S, Sollfrank S, Acker T, Prokosch HU, Christoph J.; Supporting Molecular Tumor Boards in Molecular-guided Decision-making - the Current Status of Five German University Hospitals.; Stud Health Technol Inform. 2017;236:48-54. doi: 10.3233/978-1-61499-759-7-48. PMID: 28508778.
     

  • Jaravine V, Balmford J, Metzger P, Boerries M, Binder H, Boeker M. (2020). "Annotation of Human Exome Gene Variants with Consensus Pathogenicity" Genes 11 (9), 1076     
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  •   Kampf MO, Kraska D, Prokosch HU (2019). "An Analysis of Erlangen University Hospital’s Billing Data on Utility-Based De-Identification." Stud Health Technol Inform. 258: 70-74.        
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  •   Kapsner LA, Kampf MO, Seuchter SA, Kamdje-Wabo G, Gradinger T, Ganslandt T, Mate S, Guendner J, Kraska D, Prokosch HU. Moving Towards an EHR Data Quality Framework: The MIRACUM Approach. Stud Health Technol Inform. 2019;267:247-253.   
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  •   Knaup P, Deserno T, Prokosch HU, Sax U (2018). "Implementation of a National Framework to Promote Health Data Sharing. The German Medical Informatics Initiative." Yearbook of Medical Informatics, Georg Thieme Verlag KG Stuttgart.      
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  •   Mate S, Bürkle T, Kapsner LA, Toddenroth D, Kampf M, Sedlmayr M, Castellanos I, Prokosch HU, Kraus S.A Method for the Graphical Modeling of Relative Temporal Constraints. J Biomed Inform. 2019, 100. doi: 10.1016/j.jbi.2019.103314. 
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  •   Lenz S, Hackenberg M, Binder H; The JuliaConnectoR: a functionally oriented interface for integrating Julia in R; arXiv:2005.06334
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  •  Lenz S, Hess M, Binder H, Unsupervised deep learning on biomedical data with BoltzmannMachines.jl; doi.org/10.1101/578252
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  • Lenz S, Zöller D, Hess M, Binder H; Architectures for distributed privacy-preserving deep learning; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 63. Jahrestagung der GMDS, Osnabrück, 02.-06.09.2018. Düsseldorf: German Medical Science GMS Publishing House; 2018. DocAbstr. 207, DOI: 10.3205/18gmds097
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  •   Öfelein M, Reichold M, Maier C, Prokosch HU. Designing a Framework of Components to Support Patient Engagement in Research. Stud Health Technol Inform. 2019;267:20-27.                 
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  • Ploner N, Prokosch HU. (2020)Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:158-162.
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  • Pugliese P, Knell C, Christoph J (2020) Exchange of Clinical and Omics Data According to FAIR Principles: A Review of Open Source Solutions; Methods Inf Med. 2020;59(S 01):e13-e20
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  •   Prasser F, Kohlbacher O, Mansmann U, Bauer B, Kuhn K (2018). "Data Integration for Future Medicine (DIFUTURE). An Architectural and Methodological Overview." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.      
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  •   Prokosch HU, Acker T, Bernarding J, Binder H, Boeker M, Boerries M, Daumke P, Ganslandt T, Hesser J, Höning G, Neumaier M, Marquardt K, Renz H, Rothkötter HJ, Schade-Brittinger C Schmücker P, Schüttler J, Sedlmayr M, Serve H, Sohrabi K, Storf H (2018). "MIRACUM: Medical Informatics in Research and Care in University Medicine. A Large Data Sharing Network to Enhance Translational Research and Medical Care." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.       
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  • Rau H, Geidel L, Bialke M, Blumentritt A, Langanke M, Liedtke W, Pasewald S, Stahl D, Bahls T, Maier C, Prokosch HU, Hoffmann W.(2020) The generic Informed Consent Service gICS®: implementation and benefits of a modular consent software tool to master the challenge of electronic consent management in research; J Transl Med 18, 287 (2020).
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  • Reinecke I, Gulden C, Kümmel M, Nassirian A, Blasini R, Sedlmayr M.(2020) Design for a Modular Clinical Trial Recruitment Support System Based on FHIR and OMOP; Stud Health Technol Inform 2020;270:1393-1394
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  •   Schaaf J, Sedlmayr M, Prokosch HU, Ganslandt T, Schade-Brittinger C, von Wagner M, Kadioglu D, Schubert K, Lee-Kirsch MA, K. Kraemer BK, Winner B, Mueller T,  Schaefer JR, Wagner TOF, Bruckner-Tuderman L, Tuescher O, Boeker M, Storf H.(2020) The Status Quo of Rare Diseases Centres for the Development of a Clinical Decision Support System – A Cross-Sectional Study; Stud Health Technol Inform 2020;271:176-183
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  •   Schaaf J, Prokosch HU,  Boeker M, Schaefer J, Vasseur J, Storf H, Sedlmayr M. (2020) Interviews with experts in rare diseases for the development of clinical decision support system software - a qualitative study; BMC Med Inform Decis Mak 20, 230     
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  •   Schmücker P, Schemmann U, Winter A, Bott OJ, Knaup-Gregori P, Lautenbacher H, Phan-Vogtmann LA, Scherag A, Sohrabi K, Spreckelsen C (2019): "Aus-, Fort- und Weiterbildung in der Medizininformatik-Initiative." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 102-105.
     
  •   Schneiderheinze H, Prokosch HU, Apel H, Bellut L, Wullich B, Trollmann R, Schüttler C. Development and usability analysis of a multimedia eConsent solution. Stud Health Technol Inform. 2019; 267: 297-303.    
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  •   Schreiweis B, Ammon D, Sedlmayr M, Albashiti F, Wendt T (2019): "Das Datenintegrationszentrum – Ausgangspunkt für die datengetriebene medizinische Forschung und Versorgung." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 106-110.
     
  •   Semler SC (2019): "Die Medizininformatik-Initiative als Impulsgeber für Standardisierung und Datennutzung im deutschen Gesundheitswesen." mdi – Forum der Medizin, Dokumentation und Medizin-Informatik, 21 (4/2019): 96-98.
     
  •   Semler SC, Wissing F, Heyder R (2018). "German Medical Informatics Initiative. A National Approach to Integrating Health Data from Patient Care and Medical Research." Methods of Information in Medicine, 57(S 01), Georg Thieme Verlag KG Stuttgart.           
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  •   Sommer M, Kirchner M, Gulden C, Egloffstein S, Lux MP, Beckmann MW, Mackensen A, Prokosch HU (2019). "Design and Implementation of a Single Source Multipurpose Hospital-Wide Clinical Trial Registry." Stud Health Technol Inform. 258: 164-168.  
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  • Treppner M, Lenz S, Binder H, Zöller D; Modeling Activity Tracker Data Using Deep Boltzmann Machines; Studies in Health Technology and Informatics, Volume 253: German Medical Data Sciences: A Learning Healthcare System, DOI: 10.3233/978-1-61499-896-9-155
     

  •   Unberath P, Knell C, Prokosch HU, Christoph J (2019). "Developing New Analysis Functions for a Translational Research Platform: Extending the cBioPortal for Cancer Genomics." Stud Health Technol Inform. 258: 46-50.    
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  •   Vengadeswaran A, Neuhaus P, Hegselmann S, Storf H, Kadioglu D. Semantically annotated Metadata: Interconnecting Samply.MDR and MDM-Portal. Stud Health Technol Inform. 2019;267:86-92.
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  •   Vey J, Kapsner LA, Fuchs M, Unberath P, Veronesi G, Kunz M. A Toolbox for Functional Analysis and the Systematic Identification of Diagnostic and Prognostic Gene Expression Signatures Combining Meta-Analysis and Machine Learning.  Cancers 2019, 11, 1606; doi:10.3390/cancers11101606.
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  • Walther D, Paret C, Ritzel C, Büchner P, Unberath P, Maier W, Metzger P, Christoph J, Storf H, Boerries M, Wagner S; Definition of an annotation pipeline for a molecular tumor board focused on the processing of the result and oncological drugs in terms of usability and approval status; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e.V. (GMDS). Dortmund, 08.-11.09.2019. Düsseldorf: German Medical Science GMS Publishing House; 2019. DocAbstr. 283. doi: 10.3205/19gmds179
     

  •   Winter A, Stäubert S, Ammon D, Aiche S, Beyan O, Bischoff V, Daumke P, Decker S, Funkat G, Gewehr J, de Greiff A, Haferkamp S, Hahn U, Henkel A, Kirsten T, Klöss T, Lippert J, Löbe M, Lowitsch V, Maassen O, Maschmann J, Meister S, Mikolajczyk R, Nüchter M, Pletz M, Rahm E, Riedel M, Saleh K, Schuppert A, Smers S, Stollenwerk A, Uhlig S, Wendt T, Zenker S, Fleig W, Marx G, Scherag A, Löffler M (2018). "Smart Medical Information Technology for Healthcare (SMITH). Data Integration based on Interoperability Standards." Methods of Information in Medicine,  57(S 01), Georg Thieme Verlag KG Stuttgart. 
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  •   Zabka S, Schulz S, Brunner O, Boeker M. "How versioning of terminology systems can be supported by ontological models – a case study on TNM tumor classification." Applied Ontology, vol. 15, no. 1, pp. 41-60, 2020.  DOI: 10.3233/AO-190220.  
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  •   Zabka S, Ammon D, Ganslandt T, Gewehr J, Haverkamp C , Kiefer S, Lautenbacher H, Löbe M, Thun S, Boeker M. "Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP)." Proceedings of the Joint Ontology Workshops 2019, Episode V: The Styrian Autumn of Ontology, Graz, Austria, September 23-25, 2019. Edited by Adrien Barton, Selja Seppälä, Daniele Porello, Vol-2518.
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  •   Zierk J, Krebs A, Rauh M, Metzler M, Löscher A, Strasser E, Krause SW. "Blood counts in adult and elderly individuals: defining the norms over eight decades of life." Br J Haematol. DOI: 10.1111/bjh.16430.
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  •   Zierk J, Arzideh F, Kapsner LA, Prokosch HU, Metzler M, Rauh M. "Reference Interval Estimation from Mixed Distributions using Truncation Points and the Kolmogorov-Smirnov Distance (kosmic)." Sci Rep. 2020, 10, 1704. DOI: 10.1038/s41598-020-58749-2.
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